Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 18 studies | 36% ± 9% | |
peripheral blood | 16 studies | 33% ± 10% | |
intestine | 11 studies | 33% ± 12% | |
kidney | 6 studies | 28% ± 7% | |
liver | 6 studies | 35% ± 8% | |
bone marrow | 5 studies | 39% ± 17% | |
uterus | 5 studies | 48% ± 16% | |
prostate | 5 studies | 40% ± 11% | |
breast | 5 studies | 45% ± 15% | |
brain | 5 studies | 25% ± 7% | |
pancreas | 4 studies | 68% ± 9% | |
placenta | 4 studies | 38% ± 15% | |
lymph node | 4 studies | 25% ± 6% | |
thymus | 3 studies | 42% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 18922.58 | 244 / 245 | 99% | 879.66 | 499 / 502 |
breast | 100% | 31254.12 | 459 / 459 | 98% | 2388.86 | 1095 / 1118 |
liver | 100% | 22917.60 | 226 / 226 | 97% | 393.27 | 394 / 406 |
lung | 100% | 10822.68 | 576 / 578 | 95% | 387.60 | 1095 / 1155 |
stomach | 100% | 16939.83 | 359 / 359 | 94% | 276.32 | 268 / 286 |
intestine | 98% | 7241.36 | 948 / 966 | 94% | 309.50 | 493 / 527 |
ovary | 100% | 5486.96 | 180 / 180 | 90% | 291.48 | 385 / 430 |
pancreas | 100% | 56585.18 | 328 / 328 | 88% | 231.73 | 157 / 178 |
thymus | 100% | 8582.52 | 652 / 653 | 81% | 180.20 | 493 / 605 |
bladder | 100% | 4765.90 | 21 / 21 | 78% | 216.60 | 394 / 504 |
skin | 100% | 6313.05 | 1806 / 1809 | 64% | 142.41 | 300 / 472 |
uterus | 100% | 6007.68 | 170 / 170 | 63% | 188.87 | 290 / 459 |
esophagus | 95% | 4243.63 | 1370 / 1445 | 66% | 162.38 | 120 / 183 |
kidney | 99% | 5382.63 | 88 / 89 | 51% | 103.63 | 456 / 901 |
adrenal gland | 100% | 6839.47 | 258 / 258 | 37% | 64.98 | 84 / 230 |
spleen | 100% | 19853.66 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 6192.85 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 5530.15 | 1325 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 94% | 6783.47 | 871 / 929 | 0% | 0 | 0 / 0 |
heart | 92% | 3990.57 | 791 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 227.92 | 38 / 45 |
muscle | 78% | 3886.42 | 623 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 52% | 128.10 | 15 / 29 |
brain | 35% | 863.03 | 913 / 2642 | 9% | 13.74 | 61 / 705 |
eye | 0% | 0 | 0 / 0 | 9% | 14.46 | 7 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1990418 | Biological process | response to insulin-like growth factor stimulus |
GO_0055092 | Biological process | sterol homeostasis |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0001525 | Biological process | angiogenesis |
GO_0071333 | Biological process | cellular response to glucose stimulus |
GO_0042149 | Biological process | cellular response to glucose starvation |
GO_2000347 | Biological process | positive regulation of hepatocyte proliferation |
GO_0045348 | Biological process | positive regulation of MHC class II biosynthetic process |
GO_0002639 | Biological process | positive regulation of immunoglobulin production |
GO_0032869 | Biological process | cellular response to insulin stimulus |
GO_0055089 | Biological process | fatty acid homeostasis |
GO_1902236 | Biological process | negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway |
GO_0045582 | Biological process | positive regulation of T cell differentiation |
GO_0034976 | Biological process | response to endoplasmic reticulum stress |
GO_0045766 | Biological process | positive regulation of angiogenesis |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0036500 | Biological process | ATF6-mediated unfolded protein response |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0031670 | Biological process | cellular response to nutrient |
GO_0001889 | Biological process | liver development |
GO_0071353 | Biological process | cellular response to interleukin-4 |
GO_0045579 | Biological process | positive regulation of B cell differentiation |
GO_0042632 | Biological process | cholesterol homeostasis |
GO_0035470 | Biological process | positive regulation of vascular wound healing |
GO_0006955 | Biological process | immune response |
GO_0030968 | Biological process | endoplasmic reticulum unfolded protein response |
GO_0010832 | Biological process | negative regulation of myotube differentiation |
GO_0006633 | Biological process | fatty acid biosynthetic process |
GO_1900103 | Biological process | positive regulation of endoplasmic reticulum unfolded protein response |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0036498 | Biological process | IRE1-mediated unfolded protein response |
GO_0048666 | Biological process | neuron development |
GO_0071375 | Biological process | cellular response to peptide hormone stimulus |
GO_0045600 | Biological process | positive regulation of fat cell differentiation |
GO_0007517 | Biological process | muscle organ development |
GO_0071230 | Biological process | cellular response to amino acid stimulus |
GO_0060612 | Biological process | adipose tissue development |
GO_0071222 | Biological process | cellular response to lipopolysaccharide |
GO_0006915 | Biological process | apoptotic process |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0015031 | Biological process | protein transport |
GO_0006914 | Biological process | autophagy |
GO_1900100 | Biological process | positive regulation of plasma cell differentiation |
GO_1903489 | Biological process | positive regulation of lactation |
GO_0071332 | Biological process | cellular response to fructose stimulus |
GO_0036503 | Biological process | ERAD pathway |
GO_0035356 | Biological process | intracellular triglyceride homeostasis |
GO_0032755 | Biological process | positive regulation of interleukin-6 production |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000977 | Molecular function | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0000987 | Molecular function | cis-regulatory region sequence-specific DNA binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0005515 | Molecular function | protein binding |
Gene name | XBP1 |
Protein name | X-box-binding protein 1 X-box-binding protein 1 (XBP-1) (Tax-responsive element-binding protein 5) (TREB-5) [Cleaved into: X-box-binding protein 1, cytoplasmic form; X-box-binding protein 1, luminal form] |
Synonyms | XBP2 TREB5 |
Description | FUNCTION: Functions as a transcription factor during endoplasmic reticulum (ER) stress by regulating the unfolded protein response (UPR). Required for cardiac myogenesis and hepatogenesis during embryonic development, and the development of secretory tissues such as exocrine pancreas and salivary gland (By similarity). Involved in terminal differentiation of B lymphocytes to plasma cells and production of immunoglobulins . Modulates the cellular response to ER stress in a PIK3R-dependent manner . Binds to the cis-acting X box present in the promoter regions of major histocompatibility complex class II genes . Involved in VEGF-induced endothelial cell (EC) proliferation and retinal blood vessel formation during embryonic development but also for angiogenesis in adult tissues under ischemic conditions. Functions also as a major regulator of the UPR in obesity-induced insulin resistance and type 2 diabetes for the management of obesity and diabetes prevention (By similarity). .; FUNCTION: [Isoform 1]: Plays a role in the unconventional cytoplasmic splicing processing of its own mRNA triggered by the endoplasmic reticulum (ER) transmembrane endoribonuclease ERN1: upon ER stress, the emerging XBP1 polypeptide chain, as part of a mRNA-ribosome-nascent chain (R-RNC) complex, cotranslationally recruits its own unprocessed mRNA through transient docking to the ER membrane and translational pausing, therefore facilitating efficient IRE1-mediated XBP1 mRNA isoform 2 production . In endothelial cells (EC), associated with KDR, promotes IRE1-mediated XBP1 mRNA isoform 2 productions in a vascular endothelial growth factor (VEGF)-dependent manner, leading to EC proliferation and angiogenesis . Functions as a negative feed-back regulator of the potent transcription factor XBP1 isoform 2 protein levels through proteasome-mediated degradation, thus preventing the constitutive activation of the ER stress response signaling pathway . Inhibits the transactivation activity of XBP1 isoform 2 in myeloma cells (By similarity). Acts as a weak transcriptional factor . Together with HDAC3, contributes to the activation of NFE2L2-mediated HMOX1 transcription factor gene expression in a PI(3)K/mTORC2/Akt-dependent signaling pathway leading to EC survival under disturbed flow/oxidative stress . Binds to the ER stress response element (ERSE) upon ER stress . Binds to the consensus 5'-GATGACGTG[TG]N(3)[AT]T-3' sequence related to cAMP responsive element (CRE)-like sequences . Binds the Tax-responsive element (TRE) present in the long terminal repeat (LTR) of T-cell leukemia virus type 1 (HTLV-I) and to the TPA response elements (TRE) . Associates preferentially to the HDAC3 gene promoter region in a static flow-dependent manner . Binds to the CDH5/VE-cadherin gene promoter region . .; FUNCTION: [Isoform 2]: Functions as a stress-inducible potent transcriptional activator during endoplasmic reticulum (ER) stress by inducing unfolded protein response (UPR) target genes via binding to the UPR element (UPRE). Up-regulates target genes encoding ER chaperones and ER-associated degradation (ERAD) components to enhance the capacity of productive folding and degradation mechanism, respectively, in order to maintain the homeostasis of the ER under ER stress . Plays a role in the production of immunoglobulins and interleukin-6 in the presence of stimuli required for plasma cell differentiation (By similarity). Induces phospholipid biosynthesis and ER expansion . Contributes to the VEGF-induced endothelial cell (EC) growth and proliferation in a Akt/GSK-dependent and/or -independent signaling pathway, respectively, leading to beta-catenin nuclear translocation and E2F2 gene expression . Promotes umbilical vein EC apoptosis and atherosclerotisis development in a caspase-dependent signaling pathway, and contributes to VEGF-induced EC proliferation and angiogenesis in adult tissues under ischemic conditions . Involved in the regulation of endostatin-induced autophagy in EC through BECN1 transcriptional activation . Plays a role as an oncogene by promoting tumor progression: stimulates zinc finger protein SNAI1 transcription to induce epithelial-to-mesenchymal (EMT) transition, cell migration and invasion of breast cancer cells . Involved in adipocyte differentiation by regulating lipogenic gene expression during lactation. Plays a role in the survival of both dopaminergic neurons of the substantia nigra pars compacta (SNpc), by maintaining protein homeostasis and of myeloma cells. Increases insulin sensitivity in the liver as a response to a high carbohydrate diet, resulting in improved glucose tolerance. Improves also glucose homeostasis in an ER stress- and/or insulin-independent manner through both binding and proteasome-induced degradation of the transcription factor FOXO1, hence resulting in suppression of gluconeogenic genes expression and in a reduction of blood glucose levels. Controls the induction of de novo fatty acid synthesis in hepatocytes by regulating the expression of a subset of lipogenic genes in an ER stress- and UPR-independent manner (By similarity). Associates preferentially to the HDAC3 gene promoter region in a disturbed flow-dependent manner . Binds to the BECN1 gene promoter region . Binds to the CDH5/VE-cadherin gene promoter region . Binds to the ER stress response element (ERSE) upon ER stress . Binds to the 5'-CCACG-3' motif in the PPARG promoter (By similarity). . |
Accessions | ENST00000405219.7 B1AHH1 ENST00000344347.6 [P17861-2] B1AHH2 ENST00000403532.7 ENST00000216037.10 [P17861-1] P17861 |