Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 37% ± 19% | |
oligodendrocyte precursor cell | 14 studies | 52% ± 20% | |
endothelial cell | 13 studies | 28% ± 13% | |
GABAergic neuron | 10 studies | 66% ± 26% | |
glutamatergic neuron | 10 studies | 74% ± 22% | |
fibroblast | 10 studies | 31% ± 9% | |
macrophage | 9 studies | 38% ± 16% | |
adipocyte | 9 studies | 60% ± 13% | |
smooth muscle cell | 9 studies | 30% ± 10% | |
retinal cone cell | 7 studies | 68% ± 21% | |
epithelial cell | 6 studies | 34% ± 13% | |
cardiac muscle cell | 5 studies | 52% ± 17% | |
type II pneumocyte | 5 studies | 36% ± 5% | |
hepatocyte | 4 studies | 64% ± 27% | |
basal cell | 4 studies | 22% ± 6% | |
club cell | 4 studies | 28% ± 11% | |
Mueller cell | 4 studies | 39% ± 14% | |
retinal rod cell | 4 studies | 49% ± 12% | |
microglial cell | 4 studies | 29% ± 21% | |
endothelial cell of lymphatic vessel | 4 studies | 18% ± 3% | |
pericyte | 4 studies | 27% ± 10% | |
oligodendrocyte | 4 studies | 31% ± 19% | |
interneuron | 4 studies | 75% ± 19% | |
neuron | 3 studies | 46% ± 16% | |
GABAergic interneuron | 3 studies | 61% ± 22% | |
dendritic cell | 3 studies | 18% ± 2% | |
mesothelial cell | 3 studies | 30% ± 10% | |
retinal ganglion cell | 3 studies | 32% ± 20% | |
myeloid cell | 3 studies | 30% ± 6% | |
cholangiocyte | 3 studies | 52% ± 14% | |
ciliated cell | 3 studies | 22% ± 5% | |
respiratory goblet cell | 3 studies | 46% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 96% | 1394.37 | 236 / 245 | 100% | 16.61 | 501 / 502 |
liver | 99% | 1506.28 | 224 / 226 | 94% | 7.33 | 382 / 406 |
breast | 100% | 2306.59 | 459 / 459 | 91% | 9.22 | 1012 / 1118 |
brain | 82% | 2310.08 | 2158 / 2642 | 94% | 8.78 | 660 / 705 |
bladder | 100% | 2241.10 | 21 / 21 | 73% | 6.87 | 370 / 504 |
kidney | 99% | 1138.36 | 88 / 89 | 73% | 4.62 | 661 / 901 |
esophagus | 89% | 2259.46 | 1282 / 1445 | 73% | 5.52 | 134 / 183 |
stomach | 99% | 1744.78 | 357 / 359 | 62% | 4.08 | 176 / 286 |
thymus | 93% | 864.79 | 607 / 653 | 68% | 2.86 | 410 / 605 |
lung | 93% | 947.47 | 537 / 578 | 66% | 3.46 | 768 / 1155 |
pancreas | 64% | 443.35 | 211 / 328 | 85% | 4.61 | 151 / 178 |
uterus | 89% | 1739.31 | 151 / 170 | 60% | 3.89 | 276 / 459 |
intestine | 95% | 2567.07 | 919 / 966 | 47% | 2.47 | 246 / 527 |
adrenal gland | 99% | 1202.89 | 255 / 258 | 23% | 0.99 | 52 / 230 |
skin | 99% | 1800.29 | 1783 / 1809 | 18% | 1.12 | 87 / 472 |
ovary | 23% | 222.62 | 41 / 180 | 81% | 5.95 | 349 / 430 |
adipose | 100% | 2053.65 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5411.20 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2767.40 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.70 | 1 / 1 |
spleen | 85% | 733.64 | 205 / 241 | 0% | 0 | 0 / 0 |
heart | 77% | 774.85 | 659 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 31% | 1.86 | 14 / 45 |
lymph node | 0% | 0 | 0 / 0 | 24% | 0.87 | 7 / 29 |
eye | 0% | 0 | 0 / 0 | 1% | 0.08 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007605 | Biological process | sensory perception of sound |
GO_0002157 | Biological process | positive regulation of thyroid hormone receptor signaling pathway |
GO_0097067 | Biological process | cellular response to thyroid hormone stimulus |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0060509 | Biological process | type I pneumocyte differentiation |
GO_0046549 | Biological process | retinal cone cell development |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0007621 | Biological process | negative regulation of female receptivity |
GO_0030154 | Biological process | cell differentiation |
GO_0008050 | Biological process | female courtship behavior |
GO_0042789 | Biological process | mRNA transcription by RNA polymerase II |
GO_0097474 | Biological process | retinal cone cell apoptotic process |
GO_0002154 | Biological process | thyroid hormone receptor signaling pathway |
GO_0048384 | Biological process | retinoic acid receptor signaling pathway |
GO_0008016 | Biological process | regulation of heart contraction |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0016604 | Cellular component | nuclear body |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0019899 | Molecular function | enzyme binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0004879 | Molecular function | nuclear receptor activity |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0001223 | Molecular function | transcription coactivator binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0008270 | Molecular function | zinc ion binding |
GO_0070324 | Molecular function | thyroid hormone binding |
GO_0031490 | Molecular function | chromatin DNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | THRB |
Protein name | Truncated thyroid hormone receptor beta 1 variant IVS4B Thyroid hormone receptor beta Thyroid hormone receptor beta 1 Thyroid hormone receptor beta (Nuclear receptor subfamily 1 group A member 2) (c-erbA-2) (c-erbA-beta) |
Synonyms | ERBA2 NR1A2 THR1 |
Description | FUNCTION: Nuclear hormone receptor that can act as a repressor or activator of transcription. High affinity receptor for thyroid hormones, including triiodothyronine and thyroxine. . |
Accessions | ENST00000447875.5 A0A0R5RI99 ENST00000416420.5 [P10828-1] ENST00000646966.1 A0A0R5RIB5 P10828 J3KR21 ENST00000396671.7 [P10828-1] ENST00000428492.5 ENST00000431815.5 ENST00000645139.1 [P10828-1] E0XAW8 A0A0R5RI75 ENST00000447414.5 ENST00000646432.1 [P10828-1] ENST00000642307.1 [P10828-1] ENST00000646209.2 [P10828-1] ENST00000644321.1 [P10828-1] ENST00000280696.9 [P10828-2] A0A2R8YF24 ENST00000453729.6 C9JHC2 C9JZS5 A0A0C4DG57 C9JTN1 C9JNQ4 ENST00000643772.1 [P10828-1] C9JJM3 A0A0R5RI71 ENST00000356447.9 [P10828-1] ENST00000418247.1 ENST00000413780.5 A0A0R5RI69 W6JGS6 |