Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 31% ± 8% | |
classical monocyte | 3 studies | 22% ± 4% | |
non-classical monocyte | 3 studies | 22% ± 7% | |
ciliated cell | 3 studies | 20% ± 4% | |
endothelial cell | 3 studies | 19% ± 5% | |
macrophage | 3 studies | 20% ± 3% | |
dendritic cell | 3 studies | 31% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 21% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1900.80 | 459 / 459 | 100% | 44.26 | 1118 / 1118 |
esophagus | 100% | 1939.80 | 1445 / 1445 | 100% | 34.45 | 183 / 183 |
intestine | 100% | 1710.93 | 966 / 966 | 100% | 36.93 | 527 / 527 |
liver | 100% | 1543.53 | 226 / 226 | 100% | 37.16 | 406 / 406 |
lung | 100% | 1768.91 | 578 / 578 | 100% | 41.24 | 1155 / 1155 |
ovary | 100% | 1456.99 | 180 / 180 | 100% | 39.37 | 430 / 430 |
pancreas | 100% | 1156.09 | 328 / 328 | 100% | 37.18 | 178 / 178 |
prostate | 100% | 1736.61 | 245 / 245 | 100% | 40.98 | 502 / 502 |
skin | 100% | 2549.78 | 1809 / 1809 | 100% | 48.03 | 472 / 472 |
stomach | 100% | 1524.26 | 359 / 359 | 100% | 34.90 | 286 / 286 |
uterus | 100% | 1543.21 | 170 / 170 | 100% | 51.06 | 459 / 459 |
thymus | 100% | 1979.18 | 653 / 653 | 100% | 38.94 | 604 / 605 |
bladder | 100% | 1662.05 | 21 / 21 | 100% | 45.86 | 503 / 504 |
kidney | 100% | 1696.44 | 89 / 89 | 100% | 26.22 | 898 / 901 |
brain | 99% | 1314.79 | 2627 / 2642 | 100% | 26.93 | 705 / 705 |
adrenal gland | 100% | 1810.33 | 258 / 258 | 98% | 22.96 | 225 / 230 |
adipose | 100% | 2038.92 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 43.39 | 29 / 29 |
spleen | 100% | 1779.94 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.98 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.40 | 1 / 1 |
blood vessel | 100% | 1766.80 | 1334 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 20.62 | 79 / 80 |
muscle | 99% | 809.18 | 792 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 883.90 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1410.24 | 904 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051123 | Biological process | RNA polymerase II preinitiation complex assembly |
GO_0016567 | Biological process | protein ubiquitination |
GO_0060261 | Biological process | positive regulation of transcription initiation by RNA polymerase II |
GO_0032968 | Biological process | positive regulation of transcription elongation by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000151 | Cellular component | ubiquitin ligase complex |
GO_0016592 | Cellular component | mediator complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0070847 | Cellular component | core mediator complex |
GO_0005634 | Cellular component | nucleus |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003712 | Molecular function | transcription coregulator activity |
Gene name | MED8 |
Protein name | Mediator of RNA polymerase II transcription subunit 8 (Activator-recruited cofactor 32 kDa component) (ARC32) (Mediator complex subunit 8) Alternative protein MED8 |
Synonyms | |
Description | FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins. |
Accessions | ENST00000290663.10 [Q96G25-2] Q96G25 ENST00000372457.9 [Q96G25-1] L8E9D9 ENST00000372455.4 [Q96G25-3] |