Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 7 studies | 25% ± 8% | |
endothelial cell | 6 studies | 23% ± 8% | |
astrocyte | 6 studies | 28% ± 10% | |
epithelial cell | 4 studies | 27% ± 8% | |
glutamatergic neuron | 4 studies | 50% ± 22% | |
oligodendrocyte precursor cell | 4 studies | 28% ± 9% | |
microglial cell | 3 studies | 21% ± 3% | |
GABAergic neuron | 3 studies | 49% ± 18% | |
macrophage | 3 studies | 19% ± 3% | |
neuron | 3 studies | 31% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 32% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1092.17 | 459 / 459 | 100% | 12.49 | 1118 / 1118 |
esophagus | 100% | 1304.09 | 1445 / 1445 | 100% | 10.25 | 183 / 183 |
ovary | 100% | 2123.71 | 180 / 180 | 100% | 14.41 | 430 / 430 |
prostate | 100% | 1427.80 | 245 / 245 | 100% | 10.19 | 502 / 502 |
stomach | 100% | 972.55 | 359 / 359 | 100% | 9.40 | 286 / 286 |
thymus | 100% | 3318.27 | 653 / 653 | 100% | 16.10 | 605 / 605 |
uterus | 100% | 2042.69 | 170 / 170 | 100% | 12.54 | 459 / 459 |
lung | 100% | 1287.13 | 577 / 578 | 100% | 9.22 | 1155 / 1155 |
intestine | 100% | 1429.81 | 966 / 966 | 100% | 9.75 | 526 / 527 |
bladder | 100% | 1888.48 | 21 / 21 | 100% | 9.69 | 503 / 504 |
brain | 100% | 1430.27 | 2634 / 2642 | 100% | 11.45 | 705 / 705 |
skin | 100% | 1226.90 | 1808 / 1809 | 99% | 10.13 | 468 / 472 |
kidney | 100% | 1136.42 | 89 / 89 | 99% | 7.78 | 889 / 901 |
adrenal gland | 100% | 1081.72 | 258 / 258 | 97% | 7.95 | 224 / 230 |
liver | 100% | 650.58 | 226 / 226 | 97% | 5.14 | 395 / 406 |
pancreas | 97% | 533.08 | 319 / 328 | 99% | 8.72 | 176 / 178 |
lymph node | 0% | 0 | 0 / 0 | 100% | 9.20 | 29 / 29 |
spleen | 100% | 1291.97 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.18 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.76 | 1 / 1 |
adipose | 100% | 1174.89 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1060.29 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1041.15 | 1333 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 1051.65 | 895 / 929 | 0% | 0 | 0 / 0 |
heart | 94% | 574.45 | 811 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 6.05 | 73 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0030217 | Biological process | T cell differentiation |
GO_0001525 | Biological process | angiogenesis |
GO_0043010 | Biological process | camera-type eye development |
GO_0030218 | Biological process | erythrocyte differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005737 | Cellular component | cytoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0003682 | Molecular function | chromatin binding |
Gene name | PKNOX1 |
Protein name | Homeobox protein PKNOX1 (Homeobox protein PREP-1) (PBX/knotted homeobox 1) Homeobox-containing protein PKNOX1 (PBX/knotted 1 homeobox 1) PKNOX1 protein PBX/knotted 1 homeobox 1 |
Synonyms | PREP1 hCG_2043122 |
Description | FUNCTION: Activates transcription in the presence of PBX1A and HOXA1. . |
Accessions | H0YM69 P55347 ENST00000291547.10 [P55347-1] ENST00000432907.6 Q6PKH2 Q96I87 ENST00000560448.5 E7EPN6 |