Insufficient scRNA-seq data for expression of HOXC5 at single-cell level.
Insufficient scRNA-seq data for expression of HOXC5 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 405.38 | 180 / 180 | 31% | 0.77 | 133 / 430 |
adrenal gland | 97% | 112.18 | 249 / 258 | 32% | 0.56 | 74 / 230 |
breast | 100% | 213.34 | 457 / 459 | 7% | 0.13 | 81 / 1118 |
stomach | 99% | 206.68 | 355 / 359 | 6% | 0.15 | 18 / 286 |
skin | 100% | 187.27 | 1804 / 1809 | 3% | 0.04 | 15 / 472 |
kidney | 99% | 248.11 | 88 / 89 | 2% | 0.04 | 22 / 901 |
adipose | 97% | 216.16 | 1169 / 1204 | 0% | 0 | 0 / 0 |
muscle | 97% | 90.93 | 779 / 803 | 0% | 0 | 0 / 0 |
esophagus | 93% | 126.52 | 1351 / 1445 | 1% | 0.01 | 1 / 183 |
uterus | 82% | 166.83 | 140 / 170 | 3% | 0.05 | 13 / 459 |
blood vessel | 65% | 166.65 | 872 / 1335 | 0% | 0 | 0 / 0 |
thymus | 49% | 32.51 | 322 / 653 | 2% | 0.08 | 10 / 605 |
intestine | 44% | 59.07 | 421 / 966 | 2% | 0.05 | 11 / 527 |
prostate | 20% | 13.38 | 50 / 245 | 0% | 0.00 | 1 / 502 |
bladder | 19% | 11.67 | 4 / 21 | 1% | 0.05 | 6 / 504 |
lung | 15% | 9.98 | 84 / 578 | 2% | 0.05 | 24 / 1155 |
brain | 6% | 8.17 | 156 / 2642 | 1% | 0.03 | 7 / 705 |
spleen | 3% | 1.36 | 7 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.06 | 1 / 45 |
heart | 2% | 1.14 | 17 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 2% | 1.08 | 18 / 929 | 0% | 0 | 0 / 0 |
pancreas | 2% | 0.88 | 6 / 328 | 0% | 0 | 0 / 178 |
liver | 0% | 0 | 0 / 226 | 0% | 0.01 | 1 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048706 | Biological process | embryonic skeletal system development |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0030054 | Cellular component | cell junction |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXC5 |
Protein name | Homeobox protein Hox-C5 (Homeobox protein CP11) (Homeobox protein Hox-3D) |
Synonyms | HOX3D |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. |
Accessions | Q00444 ENST00000312492.3 |