Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 64% ± 22% | |
endothelial cell | 18 studies | 30% ± 15% | |
fibroblast | 17 studies | 39% ± 18% | |
ciliated cell | 13 studies | 38% ± 22% | |
endothelial cell of lymphatic vessel | 10 studies | 46% ± 17% | |
macrophage | 10 studies | 26% ± 6% | |
microglial cell | 10 studies | 25% ± 13% | |
smooth muscle cell | 9 studies | 25% ± 11% | |
pericyte | 8 studies | 19% ± 5% | |
epithelial cell | 6 studies | 38% ± 28% | |
type II pneumocyte | 6 studies | 36% ± 9% | |
glutamatergic neuron | 6 studies | 35% ± 13% | |
club cell | 6 studies | 38% ± 17% | |
mesothelial cell | 5 studies | 41% ± 13% | |
cholangiocyte | 4 studies | 78% ± 9% | |
hepatocyte | 4 studies | 57% ± 22% | |
GABAergic neuron | 4 studies | 48% ± 8% | |
adipocyte | 4 studies | 23% ± 4% | |
Mueller cell | 4 studies | 40% ± 11% | |
Schwann cell | 4 studies | 36% ± 10% | |
respiratory goblet cell | 4 studies | 46% ± 17% | |
basal cell | 4 studies | 44% ± 24% | |
hepatic stellate cell | 3 studies | 55% ± 12% | |
endothelial cell of vascular tree | 3 studies | 22% ± 2% | |
abnormal cell | 3 studies | 30% ± 17% | |
retinal pigment epithelial cell | 3 studies | 33% ± 17% | |
pancreatic ductal cell | 3 studies | 46% ± 22% | |
ependymal cell | 3 studies | 87% ± 6% | |
neuron | 3 studies | 23% ± 3% | |
interneuron | 3 studies | 31% ± 19% | |
renal principal cell | 3 studies | 68% ± 34% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 1425.98 | 328 / 328 | 93% | 8.62 | 165 / 178 |
kidney | 100% | 1953.70 | 89 / 89 | 91% | 10.94 | 819 / 901 |
thymus | 100% | 3082.03 | 653 / 653 | 87% | 12.40 | 525 / 605 |
brain | 84% | 582.83 | 2226 / 2642 | 93% | 11.91 | 653 / 705 |
lung | 100% | 1152.81 | 576 / 578 | 74% | 4.95 | 855 / 1155 |
ovary | 100% | 1945.74 | 180 / 180 | 72% | 5.10 | 311 / 430 |
breast | 97% | 592.89 | 446 / 459 | 54% | 2.52 | 607 / 1118 |
uterus | 99% | 1030.29 | 169 / 170 | 42% | 3.03 | 194 / 459 |
bladder | 100% | 1244.48 | 21 / 21 | 38% | 1.98 | 190 / 504 |
prostate | 100% | 1085.31 | 244 / 245 | 37% | 1.23 | 186 / 502 |
liver | 100% | 558.87 | 226 / 226 | 35% | 3.54 | 143 / 406 |
esophagus | 71% | 457.78 | 1029 / 1445 | 58% | 3.81 | 106 / 183 |
intestine | 98% | 561.13 | 948 / 966 | 31% | 1.89 | 162 / 527 |
stomach | 69% | 438.79 | 248 / 359 | 46% | 3.04 | 131 / 286 |
blood vessel | 100% | 1252.37 | 1335 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1075.30 | 1199 / 1204 | 0% | 0 | 0 / 0 |
spleen | 97% | 554.01 | 234 / 241 | 0% | 0 | 0 / 0 |
adrenal gland | 88% | 477.42 | 226 / 258 | 8% | 0.51 | 18 / 230 |
heart | 76% | 433.41 | 657 / 861 | 0% | 0 | 0 / 0 |
skin | 61% | 598.68 | 1109 / 1809 | 13% | 0.70 | 60 / 472 |
muscle | 42% | 163.67 | 335 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 22% | 0.90 | 10 / 45 |
peripheral blood | 7% | 30.05 | 65 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
Gene name | GLIS3 |
Protein name | GLIS family zinc finger 3 transcript variant TE2 GLIS family zinc finger 3 transcript variant TS1 GLIS family zinc finger 3 (GLIS family zinc finger 3 transcript variant TS3) (GLIS family zinc finger 3 transcript variant TS4) (GLIS family zinc finger 3 transcript variant TS5) GLIS family zinc finger 3 isoform 2 GLIS family zinc finger 3 transcript variant TS21 GLIS family zinc finger 3 transcript variant TS6 GLIS family zinc finger 3 isoform 1 GLIS family zinc finger 3 transcript variant TS13 GLIS family zinc finger 3 Zinc finger protein GLIS3 (GLI-similar 3) (Zinc finger protein 515) GLIS family zinc finger 3 transcript variant TS14 (GLIS family zinc finger 3 transcript variant TS15) (GLIS family zinc finger 3 transcript variant TS16) (GLIS family zinc finger 3 transcript variant TS17) (GLIS family zinc finger 3 transcript variant TS18) (GLIS family zinc finger 3 transcript variant TS19) (GLIS family zinc finger 3 transcript variant TS20) GLIS family zinc finger 3 (GLIS family zinc finger 3 transcript variant TS11) (GLIS family zinc finger 3 transcript variant TS7) (GLIS family zinc finger 3 transcript variant TS8) (GLIS family zinc finger 3 transcript variant TS9) GLIS family zinc finger 3 transcript variant TS22 GLIS family zinc finger 3 transcript variant TE1 GLIS family zinc finger 3 transcript variant TS12 GLIS family zinc finger 3 isoform 3 |
Synonyms | ZNF515 |
Description | FUNCTION: Acts both as a repressor and an activator of transcription. Binds to the consensus sequence 5'-GACCACCCAC-3' (By similarity). . |
Accessions | ENST00000478315.5 ENST00000462164.5 ENST00000324333.14 [Q8NEA6-1] F8WEV9 Q1PHK4 ENST00000477901.5 A0A804HJJ4 Q1PHJ8 A0A2R8YEK9 Q1PHI3 Q1PHK2 Q1PHJ0 ENST00000478844.5 ENST00000645097.1 Q1PHI2 Q1PHJ1 A0A0S2Z6Q5 ENST00000491889.6 ENST00000682749.1 [Q8NEA6-1] ENST00000682846.1 Q1PHI1 A0A0S2Z689 Q8NEA6 Q1PHK3 Q1PHJ2 Q1PHJ7 ENST00000683998.1 ENST00000381971.8 [Q8NEA6-2] A0A0S2Z649 ENST00000481827.5 |