Name | Number of supported studies | Average coverage | |
---|---|---|---|
club cell | 5 studies | 26% ± 13% | |
squamous epithelial cell | 4 studies | 48% ± 13% | |
epithelial cell | 4 studies | 34% ± 18% | |
basal cell | 4 studies | 27% ± 12% | |
rod bipolar cell | 3 studies | 27% ± 11% | |
glutamatergic neuron | 3 studies | 24% ± 7% |
Insufficient scRNA-seq data for expression of GRHL1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 82% | 1874.26 | 200 / 245 | 90% | 7.64 | 450 / 502 |
breast | 63% | 2127.46 | 289 / 459 | 96% | 18.19 | 1071 / 1118 |
esophagus | 39% | 6598.27 | 568 / 1445 | 90% | 20.40 | 165 / 183 |
lung | 30% | 497.51 | 175 / 578 | 80% | 12.51 | 929 / 1155 |
bladder | 33% | 833.05 | 7 / 21 | 74% | 19.60 | 374 / 504 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.01 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 93% | 22.18 | 42 / 45 |
liver | 59% | 831.20 | 133 / 226 | 23% | 1.20 | 95 / 406 |
skin | 72% | 8727.97 | 1305 / 1809 | 9% | 0.93 | 41 / 472 |
uterus | 1% | 184.84 | 2 / 170 | 78% | 23.71 | 357 / 459 |
thymus | 13% | 155.43 | 83 / 653 | 56% | 3.30 | 340 / 605 |
pancreas | 2% | 20.38 | 7 / 328 | 58% | 6.72 | 104 / 178 |
ovary | 0% | 0 | 0 / 180 | 43% | 2.60 | 186 / 430 |
stomach | 5% | 66.72 | 19 / 359 | 34% | 1.79 | 97 / 286 |
intestine | 2% | 22.82 | 20 / 966 | 34% | 2.53 | 178 / 527 |
kidney | 9% | 95.64 | 8 / 89 | 15% | 0.96 | 136 / 901 |
adrenal gland | 0% | 4.14 | 1 / 258 | 12% | 0.53 | 27 / 230 |
adipose | 11% | 152.64 | 131 / 1204 | 0% | 0 | 0 / 0 |
brain | 1% | 14.78 | 27 / 2642 | 5% | 0.21 | 33 / 705 |
heart | 3% | 31.65 | 22 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 1% | 13.65 | 12 / 1335 | 0% | 0 | 0 / 0 |
muscle | 0% | 3.64 | 2 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
GO_0008544 | Biological process | epidermis development |
GO_0061436 | Biological process | establishment of skin barrier |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0045616 | Biological process | regulation of keratinocyte differentiation |
GO_0002934 | Biological process | desmosome organization |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0031490 | Molecular function | chromatin DNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | GRHL1 |
Protein name | Grainyhead like transcription factor 1 Grainyhead like transcription factor 1 (cDNA FLJ51493, highly similar to Grainyhead-like protein 1) Grainyhead-like protein 1 homolog (Mammalian grainyhead) (NH32) (Transcription factor CP2-like 2) (Transcription factor LBP-32) |
Synonyms | LBP32 MGR TFCP2L2 |
Description | FUNCTION: Transcription factor involved in epithelial development. Binds directly to the consensus DNA sequence 5'-AACCGGTT-3' . Important regulator of DSG1 in the context of hair anchorage and epidermal differentiation, participates in the maintenance of the skin barrier. There is no genetic interaction with GRHL3, nor functional cooperativity due to diverse target gene selectivity during epithelia development (By similarity). May play a role in regulating glucose homeostasis and insulin signaling. .; FUNCTION: [Isoform 1]: Functions as a transcription activator. .; FUNCTION: [Isoform 2]: May function as a repressor in tissues where both isoform 1 and isoform 2 are expressed. . |
Accessions | ENST00000439493.5 Q9NZI5 ENST00000472167.5 [Q9NZI5-3] ENST00000324907.14 [Q9NZI5-1] ENST00000464418.5 ENST00000480736.1 F8WFB0 B7Z1S6 ENST00000405379.6 [Q9NZI5-2] C9JYY8 |