Insufficient scRNA-seq data for expression of HOXD1 at single-cell level.
Insufficient scRNA-seq data for expression of HOXD1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 60% | 7.97 | 108 / 180 | 78% | 11.20 | 335 / 430 |
kidney | 100% | 110.21 | 89 / 89 | 24% | 0.50 | 212 / 901 |
lung | 77% | 28.73 | 445 / 578 | 35% | 1.79 | 400 / 1155 |
bladder | 86% | 49.10 | 18 / 21 | 21% | 0.69 | 106 / 504 |
intestine | 93% | 44.39 | 894 / 966 | 14% | 0.33 | 74 / 527 |
breast | 99% | 37.52 | 453 / 459 | 4% | 0.06 | 40 / 1118 |
adipose | 98% | 36.73 | 1177 / 1204 | 0% | 0 | 0 / 0 |
uterus | 71% | 10.41 | 121 / 170 | 27% | 0.60 | 122 / 459 |
spleen | 93% | 20.63 | 224 / 241 | 0% | 0 | 0 / 0 |
esophagus | 64% | 8.05 | 918 / 1445 | 21% | 0.48 | 39 / 183 |
skin | 54% | 7.96 | 981 / 1809 | 28% | 0.88 | 132 / 472 |
prostate | 64% | 19.74 | 157 / 245 | 8% | 0.51 | 42 / 502 |
brain | 58% | 30.06 | 1538 / 2642 | 11% | 0.21 | 79 / 705 |
stomach | 54% | 6.09 | 194 / 359 | 8% | 0.26 | 24 / 286 |
blood vessel | 52% | 6.89 | 691 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 23% | 2.17 | 59 / 258 | 23% | 0.47 | 54 / 230 |
thymus | 32% | 3.26 | 208 / 653 | 13% | 0.60 | 76 / 605 |
eye | 0% | 0 | 0 / 0 | 41% | 2.51 | 33 / 80 |
pancreas | 19% | 1.70 | 62 / 328 | 4% | 0.11 | 8 / 178 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.30 | 5 / 45 |
muscle | 7% | 0.60 | 58 / 803 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 6% | 0.17 | 23 / 406 |
heart | 5% | 0.58 | 47 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.02 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0019233 | Biological process | sensory perception of pain |
GO_0030182 | Biological process | neuron differentiation |
GO_0048706 | Biological process | embryonic skeletal system development |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXD1 |
Protein name | Homeobox protein Hox-D1 Homeobox protein Hox-D1 (Homeobox protein Hox-GG) HOXD1 protein |
Synonyms | HOX4G HOX4 |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body structures. |
Accessions | Q96CA4 Q9GZZ0 Q8IZ25 ENST00000331462.6 |