Insufficient scRNA-seq data for expression of SPIC at single-cell level.
Insufficient scRNA-seq data for expression of SPIC at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
spleen | 100% | 713.22 | 241 / 241 | 0% | 0 | 0 / 0 |
liver | 70% | 11.42 | 159 / 226 | 7% | 0.17 | 30 / 406 |
lymph node | 0% | 0 | 0 / 0 | 69% | 3.43 | 20 / 29 |
lung | 17% | 1.40 | 100 / 578 | 7% | 1.08 | 76 / 1155 |
esophagus | 17% | 1.30 | 246 / 1445 | 6% | 0.27 | 11 / 183 |
peripheral blood | 21% | 2.08 | 198 / 929 | 0% | 0 | 0 / 0 |
intestine | 17% | 2.52 | 166 / 966 | 3% | 0.09 | 16 / 527 |
tonsil | 0% | 0 | 0 / 0 | 18% | 0.31 | 8 / 45 |
thymus | 7% | 0.77 | 48 / 653 | 8% | 1.44 | 48 / 605 |
stomach | 6% | 0.36 | 22 / 359 | 8% | 0.36 | 23 / 286 |
kidney | 2% | 0.24 | 2 / 89 | 10% | 0.21 | 94 / 901 |
skin | 1% | 0.06 | 22 / 1809 | 8% | 0.18 | 36 / 472 |
prostate | 8% | 0.43 | 20 / 245 | 0% | 0 | 0 / 502 |
adrenal gland | 5% | 0.24 | 12 / 258 | 3% | 0.05 | 6 / 230 |
bladder | 5% | 0.19 | 1 / 21 | 1% | 0.06 | 5 / 504 |
adipose | 5% | 0.53 | 66 / 1204 | 0% | 0 | 0 / 0 |
breast | 3% | 0.18 | 13 / 459 | 2% | 0.07 | 22 / 1118 |
uterus | 1% | 0.06 | 2 / 170 | 3% | 0.81 | 12 / 459 |
ovary | 3% | 0.26 | 6 / 180 | 0% | 0 | 0 / 430 |
blood vessel | 3% | 0.23 | 40 / 1335 | 0% | 0 | 0 / 0 |
muscle | 3% | 0.11 | 23 / 803 | 0% | 0 | 0 / 0 |
pancreas | 1% | 0.02 | 2 / 328 | 1% | 0.02 | 2 / 178 |
heart | 2% | 0.06 | 13 / 861 | 0% | 0 | 0 / 0 |
brain | 1% | 0.03 | 14 / 2642 | 1% | 0.04 | 5 / 705 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001824 | Biological process | blastocyst development |
GO_0030154 | Biological process | cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | SPIC |
Protein name | Transcription factor Spi-C |
Synonyms | |
Description | FUNCTION: Controls the development of red pulp macrophages required for red blood cells recycling and iron homeostasis. Transcription factor that binds to the PU-box, a purine-rich DNA sequence (5'-GAGGA[AT]-3') that can act as a lymphoid-specific enhancer. Regulates VCAM1 gene expression (By similarity). . |
Accessions | Q8N5J4 ENST00000551346.2 |