HOXB4 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of HOXB4 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	1011.15	89 / 89	94%	10.97	843 / 901
esophagus	100%	1238.82	1439 / 1445	85%	10.81	156 / 183
uterus	98%	571.29	166 / 170	86%	15.87	395 / 459
intestine	100%	1294.24	965 / 966	82%	9.41	432 / 527
adrenal gland	98%	498.10	254 / 258	83%	9.49	191 / 230
bladder	90%	296.81	19 / 21	88%	12.45	441 / 504
breast	100%	677.05	458 / 459	71%	11.87	799 / 1118
lung	100%	828.88	576 / 578	68%	7.12	782 / 1155
stomach	89%	681.77	319 / 359	78%	8.14	222 / 286
skin	78%	247.30	1416 / 1809	82%	10.72	388 / 472
pancreas	35%	70.86	114 / 328	96%	11.97	170 / 178
ovary	12%	36.68	22 / 180	93%	41.26	401 / 430
spleen	100%	664.85	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	15.60	1 / 1
adipose	100%	706.13	1202 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	93%	8.64	27 / 29
thymus	70%	182.66	460 / 653	17%	0.82	102 / 605
prostate	64%	165.42	156 / 245	15%	0.87	76 / 502
blood vessel	59%	345.73	792 / 1335	0%	0	0 / 0
liver	28%	61.71	63 / 226	14%	0.73	55 / 406
heart	30%	65.17	261 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	29%	1.51	13 / 45
peripheral blood	26%	151.66	239 / 929	0%	0	0 / 0
brain	6%	25.21	154 / 2642	16%	3.46	116 / 705
muscle	19%	32.47	154 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.07	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0048539	Biological process	bone marrow development
GO_0060218	Biological process	hematopoietic stem cell differentiation
GO_0048704	Biological process	embryonic skeletal system morphogenesis
GO_0060216	Biological process	definitive hemopoiesis
GO_0048536	Biological process	spleen development
GO_2000738	Biological process	positive regulation of stem cell differentiation
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0002011	Biological process	morphogenesis of an epithelial sheet
GO_0048103	Biological process	somatic stem cell division
GO_0071425	Biological process	hematopoietic stem cell proliferation
GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0009952	Biological process	anterior/posterior pattern specification
GO_0005813	Cellular component	centrosome
GO_0005654	Cellular component	nucleoplasm
GO_0000785	Cellular component	chromatin
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific

Gene name	HOXB4
Protein name	Homeobox protein Hox-B4 (Homeobox protein Hox-2.6) (Homeobox protein Hox-2F)
Synonyms	HOX2F
Description	FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
Accessions	P17483 ENST00000332503.6

HOXB4 report