Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 29% ± 12% | |
glutamatergic neuron | 9 studies | 39% ± 20% | |
amacrine cell | 8 studies | 39% ± 15% | |
retina horizontal cell | 5 studies | 27% ± 7% | |
retinal bipolar neuron | 4 studies | 31% ± 6% | |
Mueller cell | 4 studies | 21% ± 3% | |
hepatocyte | 4 studies | 58% ± 28% | |
GABAergic neuron | 4 studies | 30% ± 9% | |
astrocyte | 4 studies | 21% ± 5% | |
neuron | 3 studies | 24% ± 7% | |
fibroblast | 3 studies | 26% ± 7% | |
glycinergic amacrine cell | 3 studies | 40% ± 3% | |
rod bipolar cell | 3 studies | 40% ± 3% | |
type II pneumocyte | 3 studies | 19% ± 1% | |
oligodendrocyte precursor cell | 3 studies | 20% ± 3% | |
interneuron | 3 studies | 40% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 98% | 4832.60 | 2591 / 2642 | 93% | 22.32 | 659 / 705 |
liver | 96% | 4797.16 | 216 / 226 | 92% | 37.12 | 374 / 406 |
kidney | 98% | 2323.60 | 87 / 89 | 87% | 17.18 | 785 / 901 |
adrenal gland | 95% | 3257.08 | 246 / 258 | 87% | 19.75 | 199 / 230 |
prostate | 94% | 2810.68 | 231 / 245 | 87% | 9.08 | 439 / 502 |
thymus | 99% | 3434.22 | 644 / 653 | 72% | 13.92 | 437 / 605 |
esophagus | 99% | 7624.11 | 1436 / 1445 | 40% | 5.01 | 73 / 183 |
lung | 81% | 1530.63 | 467 / 578 | 57% | 7.89 | 662 / 1155 |
breast | 94% | 2393.30 | 430 / 459 | 41% | 3.95 | 458 / 1118 |
uterus | 98% | 3171.79 | 166 / 170 | 30% | 2.42 | 139 / 459 |
ovary | 100% | 7422.45 | 180 / 180 | 6% | 0.31 | 25 / 430 |
bladder | 90% | 3213.48 | 19 / 21 | 11% | 1.07 | 53 / 504 |
blood vessel | 92% | 1954.57 | 1225 / 1335 | 0% | 0 | 0 / 0 |
adipose | 86% | 1665.33 | 1031 / 1204 | 0% | 0 | 0 / 0 |
intestine | 75% | 2942.72 | 725 / 966 | 9% | 0.62 | 49 / 527 |
spleen | 83% | 1152.36 | 199 / 241 | 0% | 0 | 0 / 0 |
skin | 72% | 2864.75 | 1298 / 1809 | 8% | 0.55 | 38 / 472 |
heart | 79% | 1695.40 | 682 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 78% | 14.87 | 35 / 45 |
stomach | 40% | 1283.94 | 142 / 359 | 16% | 1.28 | 46 / 286 |
muscle | 47% | 497.80 | 375 / 803 | 0% | 0 | 0 / 0 |
pancreas | 5% | 54.63 | 18 / 328 | 39% | 2.82 | 70 / 178 |
eye | 0% | 0 | 0 / 0 | 14% | 1.24 | 11 / 80 |
lymph node | 0% | 0 | 0 / 0 | 10% | 1.59 | 3 / 29 |
peripheral blood | 0% | 1.29 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0035914 | Biological process | skeletal muscle cell differentiation |
GO_0048511 | Biological process | rhythmic process |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0003677 | Molecular function | DNA binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
Gene name | HLF |
Protein name | HLF transcription factor, PAR bZIP family member Hepatic leukemia factor |
Synonyms | |
Description | |
Accessions | ENST00000573945.5 [Q16534-2] ENST00000572002.1 I3L4R4 ENST00000575345.5 [Q16534-2] ENST00000226067.10 [Q16534-1] I3L386 ENST00000570962.1 ENST00000430986.6 [Q16534-2] Q16534 |