Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 12 studies | 30% ± 13% | |
endothelial cell | 10 studies | 26% ± 8% | |
astrocyte | 9 studies | 27% ± 7% | |
fibroblast | 8 studies | 24% ± 5% | |
smooth muscle cell | 7 studies | 20% ± 5% | |
pericyte | 6 studies | 21% ± 5% | |
myofibroblast cell | 5 studies | 24% ± 10% | |
retinal rod cell | 5 studies | 20% ± 3% | |
oligodendrocyte | 5 studies | 23% ± 4% | |
connective tissue cell | 4 studies | 26% ± 7% | |
epithelial cell | 4 studies | 33% ± 11% | |
retina horizontal cell | 4 studies | 25% ± 7% | |
GABAergic neuron | 4 studies | 34% ± 10% | |
glutamatergic neuron | 4 studies | 46% ± 15% | |
oligodendrocyte precursor cell | 4 studies | 28% ± 4% | |
interneuron | 4 studies | 31% ± 15% | |
neuron | 4 studies | 31% ± 11% | |
B cell | 3 studies | 17% ± 2% | |
amacrine cell | 3 studies | 30% ± 11% | |
retinal bipolar neuron | 3 studies | 25% ± 6% | |
Mueller cell | 3 studies | 21% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3918.70 | 2641 / 2642 | 100% | 22.73 | 702 / 705 |
prostate | 100% | 3158.57 | 245 / 245 | 99% | 13.59 | 499 / 502 |
thymus | 100% | 4522.96 | 653 / 653 | 99% | 25.04 | 600 / 605 |
ovary | 100% | 3801.11 | 180 / 180 | 98% | 11.47 | 420 / 430 |
adrenal gland | 100% | 1587.30 | 258 / 258 | 95% | 16.71 | 219 / 230 |
kidney | 100% | 2485.60 | 89 / 89 | 93% | 10.24 | 838 / 901 |
breast | 100% | 2140.02 | 459 / 459 | 88% | 11.16 | 985 / 1118 |
pancreas | 86% | 720.71 | 283 / 328 | 87% | 7.54 | 155 / 178 |
lung | 100% | 1894.17 | 576 / 578 | 70% | 5.72 | 810 / 1155 |
bladder | 100% | 2742.95 | 21 / 21 | 61% | 5.41 | 308 / 504 |
uterus | 100% | 3669.15 | 170 / 170 | 40% | 4.95 | 183 / 459 |
stomach | 97% | 1493.53 | 350 / 359 | 38% | 2.47 | 110 / 286 |
intestine | 99% | 2497.12 | 960 / 966 | 30% | 1.87 | 157 / 527 |
skin | 87% | 1145.29 | 1573 / 1809 | 40% | 3.10 | 188 / 472 |
esophagus | 99% | 2512.61 | 1425 / 1445 | 28% | 1.77 | 51 / 183 |
spleen | 100% | 1885.19 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.71 | 1 / 1 |
blood vessel | 100% | 2884.69 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1599.83 | 1198 / 1204 | 0% | 0 | 0 / 0 |
heart | 99% | 2032.51 | 855 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 84% | 7.38 | 67 / 80 |
liver | 36% | 228.03 | 81 / 226 | 44% | 3.19 | 177 / 406 |
lymph node | 0% | 0 | 0 / 0 | 69% | 5.07 | 20 / 29 |
muscle | 67% | 602.61 | 536 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 16% | 0.91 | 7 / 45 |
peripheral blood | 15% | 108.64 | 141 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZSCAN18 |
Protein name | Zinc finger and SCAN domain-containing protein 18 (Zinc finger protein 447) Zinc finger and SCAN domain containing 18 ZSCAN18 protein |
Synonyms | ZNF447 |
Description | FUNCTION: May be involved in transcriptional regulation. |
Accessions | ENST00000600897.5 Q8TBC5 ENST00000595721.1 M0R1U9 ENST00000600522.1 ENST00000600845.1 M0QXJ0 M0QZ65 M0R111 Q8WWG4 ENST00000595944.1 ENST00000421612.6 [Q8TBC5-4] ENST00000601063.1 ENST00000601144.6 [Q8TBC5-1] ENST00000600404.1 [Q8TBC5-3] M0R364 ENST00000433686.6 ENST00000240727.10 [Q8TBC5-1] A0A0C4DG78 M0R3C6 |