Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 13 studies | 32% ± 13% | |
endothelial cell | 13 studies | 27% ± 16% | |
fibroblast | 13 studies | 32% ± 10% | |
astrocyte | 11 studies | 36% ± 19% | |
smooth muscle cell | 11 studies | 27% ± 8% | |
mast cell | 11 studies | 29% ± 10% | |
oligodendrocyte precursor cell | 10 studies | 33% ± 10% | |
oligodendrocyte | 10 studies | 31% ± 13% | |
pericyte | 9 studies | 30% ± 14% | |
microglial cell | 8 studies | 33% ± 14% | |
retinal cone cell | 7 studies | 51% ± 24% | |
adipocyte | 7 studies | 34% ± 9% | |
GABAergic neuron | 6 studies | 38% ± 21% | |
neuron | 6 studies | 46% ± 21% | |
dendritic cell | 6 studies | 28% ± 7% | |
retinal ganglion cell | 5 studies | 36% ± 22% | |
cardiac muscle cell | 5 studies | 41% ± 10% | |
myeloid cell | 5 studies | 33% ± 15% | |
connective tissue cell | 5 studies | 24% ± 7% | |
myofibroblast cell | 5 studies | 43% ± 18% | |
monocyte | 5 studies | 34% ± 8% | |
type I pneumocyte | 5 studies | 29% ± 5% | |
type II pneumocyte | 5 studies | 26% ± 2% | |
interneuron | 4 studies | 49% ± 22% | |
mesothelial cell | 4 studies | 25% ± 5% | |
retina horizontal cell | 4 studies | 27% ± 15% | |
retinal rod cell | 4 studies | 51% ± 11% | |
glutamatergic neuron | 4 studies | 45% ± 12% | |
club cell | 4 studies | 27% ± 6% | |
epithelial cell | 3 studies | 31% ± 7% | |
glial cell | 3 studies | 32% ± 21% | |
progenitor cell | 3 studies | 41% ± 11% | |
non-classical monocyte | 3 studies | 19% ± 4% | |
hepatocyte | 3 studies | 33% ± 7% | |
B cell | 3 studies | 24% ± 7% | |
T cell | 3 studies | 22% ± 2% | |
alveolar macrophage | 3 studies | 43% ± 6% | |
chondrocyte | 3 studies | 30% ± 11% | |
ciliated cell | 3 studies | 26% ± 7% | |
natural killer cell | 3 studies | 20% ± 4% | |
lymphocyte | 3 studies | 26% ± 6% | |
basal cell | 3 studies | 34% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 3630.78 | 245 / 245 | 100% | 45.94 | 502 / 502 |
thymus | 100% | 3239.06 | 652 / 653 | 100% | 114.29 | 602 / 605 |
adrenal gland | 100% | 6994.72 | 258 / 258 | 99% | 38.27 | 227 / 230 |
pancreas | 97% | 984.34 | 317 / 328 | 99% | 20.38 | 176 / 178 |
breast | 100% | 1395.82 | 457 / 459 | 95% | 24.47 | 1065 / 1118 |
lung | 99% | 1753.15 | 574 / 578 | 94% | 16.91 | 1083 / 1155 |
esophagus | 100% | 2430.92 | 1444 / 1445 | 92% | 15.09 | 169 / 183 |
uterus | 100% | 1728.68 | 170 / 170 | 91% | 16.85 | 419 / 459 |
bladder | 100% | 2792.33 | 21 / 21 | 86% | 12.96 | 435 / 504 |
brain | 87% | 1350.75 | 2293 / 2642 | 96% | 20.70 | 677 / 705 |
stomach | 98% | 2454.22 | 352 / 359 | 83% | 12.71 | 237 / 286 |
liver | 97% | 1005.09 | 220 / 226 | 83% | 14.88 | 337 / 406 |
skin | 100% | 1517.72 | 1803 / 1809 | 79% | 10.32 | 371 / 472 |
ovary | 100% | 7255.89 | 180 / 180 | 77% | 9.54 | 333 / 430 |
kidney | 91% | 775.15 | 81 / 89 | 84% | 10.17 | 756 / 901 |
intestine | 97% | 4023.32 | 936 / 966 | 76% | 9.27 | 400 / 527 |
spleen | 100% | 1699.05 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1728.70 | 1332 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1464.94 | 1200 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 14.75 | 44 / 45 |
heart | 96% | 2767.63 | 823 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 86% | 9.47 | 25 / 29 |
peripheral blood | 64% | 1230.07 | 591 / 929 | 0% | 0 | 0 / 0 |
muscle | 50% | 343.74 | 403 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 24% | 1.90 | 19 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0002087 | Biological process | regulation of respiratory gaseous exchange by nervous system process |
GO_0007388 | Biological process | posterior compartment specification |
GO_0048568 | Biological process | embryonic organ development |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0009887 | Biological process | animal organ morphogenesis |
GO_0021516 | Biological process | dorsal spinal cord development |
GO_0008344 | Biological process | adult locomotory behavior |
GO_0001654 | Biological process | eye development |
GO_0048666 | Biological process | neuron development |
GO_0007387 | Biological process | anterior compartment pattern formation |
GO_0007420 | Biological process | brain development |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0007585 | Biological process | respiratory gaseous exchange by respiratory system |
GO_0000785 | Cellular component | chromatin |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | PBX3 |
Protein name | PBX homeobox 3 Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3) PBX3 protein |
Synonyms | |
Description | FUNCTION: Transcriptional activator that binds the sequence 5'-ATCAATCAA-3'. |
Accessions | ENST00000373492.6 ENST00000491787.7 ENST00000428092.1 H3BLX0 H0Y5D0 P40426 Q5JS98 ENST00000373489.10 [P40426-1] ENST00000373482.6 U3KQA2 ENST00000342287.9 [P40426-2] ENST00000373487.8 ENST00000447726.6 [P40426-5] Q96AL5 |