Name | Number of supported studies | Average coverage | |
---|---|---|---|
natural killer cell | 8 studies | 38% ± 20% | |
plasmablast | 7 studies | 36% ± 15% | |
endothelial cell | 7 studies | 22% ± 8% | |
T cell | 7 studies | 38% ± 10% | |
CD8-positive, alpha-beta T cell | 7 studies | 38% ± 16% | |
epithelial cell | 6 studies | 32% ± 12% | |
B cell | 5 studies | 28% ± 10% | |
conventional dendritic cell | 5 studies | 28% ± 15% | |
hematopoietic precursor cell | 5 studies | 38% ± 24% | |
pro-B cell | 5 studies | 35% ± 21% | |
basal cell | 5 studies | 26% ± 11% | |
erythrocyte | 5 studies | 34% ± 17% | |
CD4-positive, alpha-beta T cell | 5 studies | 45% ± 16% | |
abnormal cell | 4 studies | 24% ± 8% | |
transit amplifying cell | 4 studies | 33% ± 10% | |
erythroblast | 4 studies | 59% ± 26% | |
plasma cell | 4 studies | 38% ± 13% | |
retinal rod cell | 4 studies | 28% ± 11% | |
fibroblast | 4 studies | 22% ± 7% | |
ciliated cell | 4 studies | 29% ± 4% | |
effector CD8-positive, alpha-beta T cell | 4 studies | 37% ± 8% | |
gamma-delta T cell | 4 studies | 26% ± 14% | |
connective tissue cell | 3 studies | 27% ± 9% | |
neural crest cell | 3 studies | 31% ± 11% | |
dendritic cell | 3 studies | 25% ± 11% | |
granulocyte monocyte progenitor cell | 3 studies | 41% ± 28% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 48% ± 26% | |
goblet cell | 3 studies | 22% ± 6% | |
precursor B cell | 3 studies | 48% ± 22% | |
CD4-positive, alpha-beta memory T cell | 3 studies | 19% ± 2% | |
regulatory T cell | 3 studies | 33% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 1813.48 | 180 / 180 | 100% | 281.17 | 430 / 430 |
intestine | 100% | 2399.19 | 966 / 966 | 100% | 404.43 | 525 / 527 |
stomach | 99% | 1776.70 | 357 / 359 | 100% | 382.68 | 286 / 286 |
esophagus | 100% | 2582.00 | 1443 / 1445 | 99% | 339.43 | 182 / 183 |
breast | 100% | 1899.43 | 459 / 459 | 99% | 324.06 | 1107 / 1118 |
skin | 100% | 3933.67 | 1809 / 1809 | 99% | 322.12 | 466 / 472 |
bladder | 100% | 1771.52 | 21 / 21 | 98% | 425.19 | 496 / 504 |
thymus | 100% | 1833.86 | 652 / 653 | 98% | 227.32 | 595 / 605 |
uterus | 99% | 1916.28 | 168 / 170 | 99% | 619.13 | 455 / 459 |
lung | 99% | 2027.75 | 570 / 578 | 99% | 304.84 | 1144 / 1155 |
prostate | 100% | 1550.94 | 245 / 245 | 96% | 115.67 | 481 / 502 |
brain | 99% | 1313.42 | 2606 / 2642 | 97% | 202.54 | 683 / 705 |
pancreas | 97% | 1093.27 | 317 / 328 | 96% | 166.14 | 170 / 178 |
kidney | 100% | 1655.20 | 89 / 89 | 91% | 122.58 | 819 / 901 |
adrenal gland | 100% | 2729.28 | 258 / 258 | 89% | 134.48 | 205 / 230 |
liver | 100% | 1154.23 | 225 / 226 | 86% | 144.14 | 350 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 641.56 | 29 / 29 |
spleen | 100% | 3194.12 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 637.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 135.67 | 1 / 1 |
adipose | 100% | 1657.93 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1556.05 | 1328 / 1335 | 0% | 0 | 0 / 0 |
muscle | 97% | 952.03 | 779 / 803 | 0% | 0 | 0 / 0 |
heart | 94% | 1004.21 | 813 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 92% | 4738.04 | 853 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 111.60 | 68 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0044849 | Biological process | estrous cycle |
GO_0032355 | Biological process | response to estradiol |
GO_1902990 | Biological process | mitotic telomere maintenance via semi-conservative replication |
GO_0071466 | Biological process | cellular response to xenobiotic stimulus |
GO_0030855 | Biological process | epithelial cell differentiation |
GO_0007507 | Biological process | heart development |
GO_0006287 | Biological process | base-excision repair, gap-filling |
GO_0034644 | Biological process | cellular response to UV |
GO_0045739 | Biological process | positive regulation of DNA repair |
GO_1900264 | Biological process | positive regulation of DNA-directed DNA polymerase activity |
GO_0032077 | Biological process | positive regulation of deoxyribonuclease activity |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0046686 | Biological process | response to cadmium ion |
GO_0071548 | Biological process | response to dexamethasone |
GO_0031297 | Biological process | replication fork processing |
GO_0097421 | Biological process | liver regeneration |
GO_0006272 | Biological process | leading strand elongation |
GO_0045740 | Biological process | positive regulation of DNA replication |
GO_0019985 | Biological process | translesion synthesis |
GO_0006298 | Biological process | mismatch repair |
GO_1902065 | Biological process | response to L-glutamate |
GO_0070301 | Biological process | cellular response to hydrogen peroxide |
GO_0043596 | Cellular component | nuclear replication fork |
GO_0043626 | Cellular component | PCNA complex |
GO_0070557 | Cellular component | PCNA-p21 complex |
GO_0005813 | Cellular component | centrosome |
GO_0005657 | Cellular component | replication fork |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000307 | Cellular component | cyclin-dependent protein kinase holoenzyme complex |
GO_0005652 | Cellular component | nuclear lamina |
GO_0016604 | Cellular component | nuclear body |
GO_0030894 | Cellular component | replisome |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0001673 | Cellular component | male germ cell nucleus |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0019899 | Molecular function | enzyme binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0030337 | Molecular function | DNA polymerase processivity factor activity |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0070182 | Molecular function | DNA polymerase binding |
GO_0032405 | Molecular function | MutLalpha complex binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0032139 | Molecular function | dinucleotide insertion or deletion binding |
GO_0035035 | Molecular function | histone acetyltransferase binding |
GO_0000701 | Molecular function | purine-specific mismatch base pair DNA N-glycosylase activity |
GO_0005515 | Molecular function | protein binding |
GO_0030971 | Molecular function | receptor tyrosine kinase binding |
GO_0003684 | Molecular function | damaged DNA binding |
Gene name | PCNA |
Protein name | Proliferating cell nuclear antigen Proliferating cell nuclear antigen (PCNA) (Cyclin) Truncated proliferating cell nuclear antigen |
Synonyms | |
Description | FUNCTION: Auxiliary protein of DNA polymerase delta and epsilon, is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand . Induces a robust stimulatory effect on the 3'-5' exonuclease and 3'-phosphodiesterase, but not apurinic-apyrimidinic (AP) endonuclease, APEX2 activities. Has to be loaded onto DNA in order to be able to stimulate APEX2. Plays a key role in DNA damage response (DDR) by being conveniently positioned at the replication fork to coordinate DNA replication with DNA repair and DNA damage tolerance pathways . Acts as a loading platform to recruit DDR proteins that allow completion of DNA replication after DNA damage and promote postreplication repair: Monoubiquitinated PCNA leads to recruitment of translesion (TLS) polymerases, while 'Lys-63'-linked polyubiquitination of PCNA is involved in error-free pathway and employs recombination mechanisms to synthesize across the lesion . . FUNCTION: This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand. . FUNCTION: This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand. . |
Accessions | Q6FHF5 Q7Z6A1 Q7Z6A0 ENST00000379143.10 P12004 ENST00000379160.3 Q6FI35 Q7Z6A3 Q7Z6A2 |