Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 8 studies | 36% ± 18% | |
fibroblast | 8 studies | 22% ± 5% | |
endothelial cell | 6 studies | 19% ± 2% | |
macrophage | 6 studies | 22% ± 4% | |
oligodendrocyte precursor cell | 5 studies | 30% ± 9% | |
GABAergic neuron | 4 studies | 45% ± 12% | |
neuron | 3 studies | 21% ± 1% | |
endothelial cell of lymphatic vessel | 3 studies | 17% ± 2% | |
interneuron | 3 studies | 42% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 35% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 3054.68 | 245 / 245 | 94% | 7.87 | 474 / 502 |
breast | 100% | 1656.22 | 458 / 459 | 89% | 6.79 | 991 / 1118 |
thymus | 100% | 2720.26 | 652 / 653 | 88% | 8.03 | 531 / 605 |
lung | 100% | 1582.47 | 576 / 578 | 71% | 4.42 | 816 / 1155 |
esophagus | 95% | 2232.87 | 1379 / 1445 | 75% | 5.93 | 137 / 183 |
adrenal gland | 95% | 672.93 | 246 / 258 | 75% | 7.07 | 172 / 230 |
uterus | 100% | 5260.25 | 170 / 170 | 64% | 7.06 | 295 / 459 |
ovary | 100% | 7919.81 | 180 / 180 | 60% | 3.40 | 257 / 430 |
brain | 56% | 424.50 | 1471 / 2642 | 99% | 9.09 | 699 / 705 |
bladder | 100% | 3795.62 | 21 / 21 | 54% | 3.02 | 274 / 504 |
skin | 88% | 1203.33 | 1597 / 1809 | 65% | 4.25 | 306 / 472 |
intestine | 98% | 2744.64 | 947 / 966 | 50% | 2.77 | 261 / 527 |
kidney | 87% | 648.37 | 77 / 89 | 56% | 2.68 | 505 / 901 |
stomach | 75% | 1469.34 | 269 / 359 | 59% | 3.74 | 168 / 286 |
pancreas | 15% | 73.75 | 48 / 328 | 90% | 7.68 | 160 / 178 |
adipose | 100% | 1758.58 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1358.92 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1521.54 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 87% | 771.05 | 752 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 67% | 4.18 | 30 / 45 |
peripheral blood | 52% | 480.68 | 481 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 38% | 1.44 | 11 / 29 |
muscle | 23% | 118.92 | 182 / 803 | 0% | 0 | 0 / 0 |
liver | 6% | 38.12 | 14 / 226 | 10% | 0.44 | 40 / 406 |
eye | 0% | 0 | 0 / 0 | 1% | 0.03 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051968 | Biological process | positive regulation of synaptic transmission, glutamatergic |
GO_0002087 | Biological process | regulation of respiratory gaseous exchange by nervous system process |
GO_0060291 | Biological process | long-term synaptic potentiation |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0030426 | Cellular component | growth cone |
GO_0005886 | Cellular component | plasma membrane |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003682 | Molecular function | chromatin binding |
Gene name | TSHZ3 |
Protein name | Teashirt homolog 3 (Zinc finger protein 537) Teashirt zinc finger homeobox 3 |
Synonyms | ZNF537 TSH3 KIAA1474 |
Description | FUNCTION: Transcriptional regulator involved in developmental processes. Functions in association with APBB1, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. TSHZ3-mediated transcription repression involves the recruitment of histone deacetylases HDAC1 and HDAC2. Associates with chromatin in a region surrounding the CASP4 transcriptional start site(s) . Regulates the development of neurons involved in both respiratory rhythm and airflow control. Promotes maintenance of nucleus ambiguus (nA) motoneurons, which govern upper airway function, and establishes a respiratory rhythm generator (RRG) activity compatible with survival at birth. Involved in the differentiation of the proximal uretic smooth muscle cells during developmental processes. Involved in the up-regulation of myocardin, that directs the expression of smooth muscle cells in the proximal ureter (By similarity). Involved in the modulation of glutamatergic synaptic transmission and long-term synaptic potentiation (By similarity). . |
Accessions | ENST00000240587.5 Q63HK5 U3KQ78 ENST00000558569.1 |