Insufficient scRNA-seq data for expression of FOXR1 at single-cell level.
Insufficient scRNA-seq data for expression of FOXR1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 62% | 2.05 | 1639 / 2642 | 6% | 0.08 | 39 / 705 |
ovary | 56% | 10.51 | 101 / 180 | 1% | 0.01 | 5 / 430 |
skin | 53% | 1.27 | 963 / 1809 | 0% | 0 | 0 / 472 |
thymus | 43% | 0.88 | 279 / 653 | 7% | 1.52 | 41 / 605 |
breast | 47% | 1.05 | 214 / 459 | 0% | 0.01 | 4 / 1118 |
spleen | 41% | 0.81 | 100 / 241 | 0% | 0 | 0 / 0 |
uterus | 36% | 0.65 | 62 / 170 | 0% | 0.01 | 2 / 459 |
adrenal gland | 34% | 0.64 | 88 / 258 | 0% | 0.00 | 1 / 230 |
adipose | 34% | 0.72 | 415 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 34% | 0.54 | 454 / 1335 | 0% | 0 | 0 / 0 |
bladder | 33% | 0.57 | 7 / 21 | 1% | 0.07 | 3 / 504 |
lung | 33% | 0.57 | 189 / 578 | 1% | 0.02 | 8 / 1155 |
kidney | 33% | 0.47 | 29 / 89 | 0% | 0.01 | 2 / 901 |
prostate | 31% | 0.73 | 76 / 245 | 0% | 0.00 | 2 / 502 |
esophagus | 29% | 0.49 | 422 / 1445 | 1% | 0.03 | 2 / 183 |
peripheral blood | 29% | 0.62 | 265 / 929 | 0% | 0 | 0 / 0 |
intestine | 28% | 0.49 | 270 / 966 | 0% | 0.00 | 1 / 527 |
stomach | 19% | 0.28 | 70 / 359 | 1% | 0.01 | 2 / 286 |
muscle | 20% | 0.34 | 157 / 803 | 0% | 0 | 0 / 0 |
pancreas | 19% | 0.27 | 61 / 328 | 1% | 0.02 | 1 / 178 |
liver | 19% | 0.31 | 43 / 226 | 0% | 0 | 0 / 406 |
heart | 17% | 0.26 | 148 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007420 | Biological process | brain development |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
Gene name | FOXR1 |
Protein name | Forkhead box R1 variant 2 Forkhead box R1 Forkhead box protein R1 (Forkhead box protein N5) |
Synonyms | FOXN5 DLNB13 |
Description | FUNCTION: Transcription factor which acts as both an activator and a repressor . Activates transcription of a number of genes including the heat shock chaperones HSPA1A and HSPA6 and the antioxidant NADPH-dependent reductase DHRS2 which are involved in protection against oxidative stress . Required for normal brain development (By similarity). . |
Accessions | Q6PIV2 ENST00000531539.5 [Q6PIV2-2] ENST00000317011.8 [Q6PIV2-1] B0YJ16 ENST00000533282.1 H0YCU3 |