Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 66% ± 22% | |
macrophage | 18 studies | 50% ± 24% | |
oligodendrocyte | 15 studies | 39% ± 14% | |
oligodendrocyte precursor cell | 14 studies | 46% ± 17% | |
endothelial cell | 14 studies | 34% ± 15% | |
microglial cell | 14 studies | 38% ± 13% | |
fibroblast | 14 studies | 40% ± 15% | |
pericyte | 10 studies | 33% ± 10% | |
adipocyte | 10 studies | 57% ± 23% | |
smooth muscle cell | 10 studies | 33% ± 12% | |
GABAergic neuron | 9 studies | 37% ± 16% | |
glutamatergic neuron | 9 studies | 39% ± 20% | |
myeloid cell | 9 studies | 44% ± 16% | |
classical monocyte | 7 studies | 24% ± 6% | |
dendritic cell | 7 studies | 44% ± 16% | |
epithelial cell | 6 studies | 44% ± 22% | |
mast cell | 6 studies | 28% ± 12% | |
connective tissue cell | 6 studies | 25% ± 9% | |
neuron | 5 studies | 39% ± 15% | |
interneuron | 5 studies | 35% ± 14% | |
T cell | 5 studies | 22% ± 5% | |
basal cell | 5 studies | 39% ± 16% | |
monocyte | 5 studies | 51% ± 15% | |
non-classical monocyte | 4 studies | 24% ± 8% | |
CD8-positive, alpha-beta T cell | 4 studies | 19% ± 2% | |
mesothelial cell | 4 studies | 31% ± 14% | |
ciliated cell | 4 studies | 29% ± 12% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 47% ± 20% | |
regulatory T cell | 4 studies | 24% ± 8% | |
endothelial cell of lymphatic vessel | 4 studies | 29% ± 4% | |
GABAergic interneuron | 3 studies | 24% ± 2% | |
CD4-positive, alpha-beta T cell | 3 studies | 21% ± 4% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 17% ± 0% | |
mononuclear phagocyte | 3 studies | 47% ± 21% | |
lymphocyte | 3 studies | 30% ± 9% | |
retinal rod cell | 3 studies | 21% ± 1% | |
retinal pigment epithelial cell | 3 studies | 32% ± 8% | |
ependymal cell | 3 studies | 78% ± 10% | |
alveolar macrophage | 3 studies | 53% ± 9% | |
chondrocyte | 3 studies | 42% ± 21% | |
natural killer cell | 3 studies | 19% ± 3% | |
respiratory goblet cell | 3 studies | 31% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 9709.18 | 459 / 459 | 99% | 184.39 | 1106 / 1118 |
brain | 91% | 1008.13 | 2412 / 2642 | 86% | 12.87 | 609 / 705 |
ovary | 100% | 1365.35 | 180 / 180 | 75% | 17.14 | 321 / 430 |
esophagus | 100% | 3175.48 | 1445 / 1445 | 60% | 15.08 | 110 / 183 |
prostate | 100% | 2878.34 | 245 / 245 | 55% | 6.64 | 274 / 502 |
uterus | 100% | 2275.56 | 170 / 170 | 52% | 10.55 | 240 / 459 |
lung | 100% | 1578.98 | 576 / 578 | 39% | 5.43 | 455 / 1155 |
kidney | 100% | 1057.21 | 89 / 89 | 35% | 4.02 | 314 / 901 |
thymus | 100% | 1679.63 | 652 / 653 | 31% | 2.98 | 187 / 605 |
skin | 100% | 2895.74 | 1805 / 1809 | 25% | 3.35 | 120 / 472 |
bladder | 100% | 1893.52 | 21 / 21 | 12% | 1.95 | 58 / 504 |
adrenal gland | 100% | 915.36 | 257 / 258 | 6% | 0.71 | 13 / 230 |
spleen | 100% | 931.85 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2382.75 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1533.66 | 1201 / 1204 | 0% | 0 | 0 / 0 |
intestine | 88% | 1649.38 | 849 / 966 | 11% | 1.27 | 57 / 527 |
muscle | 84% | 563.21 | 678 / 803 | 0% | 0 | 0 / 0 |
heart | 76% | 710.59 | 658 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 73% | 649.97 | 679 / 929 | 0% | 0 | 0 / 0 |
stomach | 56% | 840.15 | 202 / 359 | 15% | 2.13 | 42 / 286 |
tonsil | 0% | 0 | 0 / 0 | 53% | 6.45 | 24 / 45 |
pancreas | 17% | 86.94 | 55 / 328 | 31% | 3.24 | 56 / 178 |
liver | 14% | 65.84 | 31 / 226 | 2% | 0.20 | 7 / 406 |
lymph node | 0% | 0 | 0 / 0 | 14% | 1.17 | 4 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001501 | Biological process | skeletal system development |
GO_0032330 | Biological process | regulation of chondrocyte differentiation |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000977 | Molecular function | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | TRPS1 |
Protein name | Transcriptional repressor GATA binding 1 Zinc finger transcription factor Trps1 (Tricho-rhino-phalangeal syndrome type I protein) (Zinc finger protein GC79) |
Synonyms | |
Description | FUNCTION: Transcriptional repressor. Binds specifically to GATA sequences and represses expression of GATA-regulated genes at selected sites and stages in vertebrate development. Regulates chondrocyte proliferation and differentiation. Executes multiple functions in proliferating chondrocytes, expanding the region of distal chondrocytes, activating proliferation in columnar cells and supporting the differentiation of columnar into hypertrophic chondrocytes. . |
Accessions | ENST00000519674.1 A0A1D5RMP4 ENST00000519076.5 H0YAV4 ENST00000422939.1 Q9UHF7 ENST00000451156.1 E7EVN4 F8W8T0 ENST00000640765.1 [Q9UHF7-1] ENST00000520276.5 [Q9UHF7-3] ENST00000518018.1 ENST00000517323.2 C9J6L7 ENST00000519815.5 E5RJ97 ENST00000395715.8 [Q9UHF7-2] ENST00000395713.6 E5RFF3 H0YC29 ENST00000220888.9 [Q9UHF7-1] |