SS18 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

GO_0048013Biological processephrin receptor signaling pathway
GO_0097150Biological processneuronal stem cell population maintenance
GO_0006357Biological processregulation of transcription by RNA polymerase II
GO_0006338Biological processchromatin remodeling
GO_1902459Biological processpositive regulation of stem cell population maintenance
GO_0035556Biological processintracellular signal transduction
GO_0000226Biological processmicrotubule cytoskeleton organization
GO_0045596Biological processnegative regulation of cell differentiation
GO_0008284Biological processpositive regulation of cell population proliferation
GO_0000902Biological processcell morphogenesis
GO_0009410Biological processresponse to xenobiotic stimulus
GO_0045944Biological processpositive regulation of transcription by RNA polymerase II
GO_0140288Cellular componentGBAF complex
GO_0071564Cellular componentnpBAF complex
GO_0016514Cellular componentSWI/SNF complex
GO_0015630Cellular componentmicrotubule cytoskeleton
GO_0000785Cellular componentchromatin
GO_0005634Cellular componentnucleus
GO_0003713Molecular functiontranscription coactivator activity
GO_0030374Molecular functionnuclear receptor coactivator activity
GO_0005515Molecular functionprotein binding

IV. Literature review

[source]
Gene nameSS18
Protein nameSS18 subunit of BAF chromatin remodeling complex (cDNA FLJ58120, highly similar to SSXT protein)
SS18 protein
SS18 subunit of BAF chromatin remodeling complex
Synovial sarcoma translocation, chromosome 18
Synovial sarcoma translocation, chromosome 18 (cDNA FLJ57021, highly similar to SSXT protein) (cDNA, FLJ79201, highly similar to SSXT protein)
Protein SSXT (Protein SYT) (Synovial sarcoma translocated to X chromosome protein)
SynonymsSSXT
SYT
hCG_37175
DescriptionFUNCTION: Appears to function synergistically with RBM14 as a transcriptional coactivator. Isoform 1 and isoform 2 function in nuclear receptor coactivation. Isoform 1 and isoform 2 function in general transcriptional coactivation. Component of SWI/SNF chromatin remodeling subcomplex GBAF that carries out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner . .

AccessionsENST00000577572.5
ENST00000577636.5
ENST00000582448.5
J3KT22
J3KT74
ENST00000539244.6
ENST00000415083.7 [Q15532-1]
ENST00000579640.5
ENST00000580751.5
ENST00000579061.5
ENST00000581021.5
ENST00000578954.5
ENST00000585121.5
F5GWN1
J3QLJ7
J3QQW6
Q6FGL9
Q4VAX2
J3KRP6
J3QQM2
ENST00000582792.5
X6R3J2
ENST00000584083.5
Q4VAX0
ENST00000542420.6
ENST00000580642.2
J3QSG1
J3QQW2
Q15532
ENST00000581570.5
ENST00000269137.11 [Q15532-2]
B4DLD3
J3QQX5
J3QS72
ENST00000578700.5
J3QSB3
ENST00000269138.9