Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 12 studies | 24% ± 9% | |
endothelial cell | 12 studies | 26% ± 10% | |
fibroblast | 11 studies | 23% ± 6% | |
oligodendrocyte | 10 studies | 31% ± 11% | |
adipocyte | 8 studies | 24% ± 8% | |
microglial cell | 7 studies | 23% ± 6% | |
pericyte | 7 studies | 19% ± 5% | |
astrocyte | 7 studies | 31% ± 13% | |
oligodendrocyte precursor cell | 7 studies | 30% ± 13% | |
retina horizontal cell | 6 studies | 26% ± 12% | |
macrophage | 5 studies | 24% ± 7% | |
B cell | 4 studies | 17% ± 1% | |
epithelial cell | 4 studies | 41% ± 15% | |
GABAergic neuron | 4 studies | 38% ± 11% | |
glutamatergic neuron | 4 studies | 52% ± 14% | |
smooth muscle cell | 4 studies | 17% ± 1% | |
amacrine cell | 3 studies | 22% ± 6% | |
Mueller cell | 3 studies | 21% ± 1% | |
hepatocyte | 3 studies | 40% ± 30% | |
type I pneumocyte | 3 studies | 20% ± 3% | |
dendritic cell | 3 studies | 24% ± 6% | |
natural killer cell | 3 studies | 17% ± 1% | |
club cell | 3 studies | 23% ± 3% | |
myofibroblast cell | 3 studies | 23% ± 6% | |
endothelial cell of lymphatic vessel | 3 studies | 22% ± 4% | |
basal cell | 3 studies | 29% ± 16% | |
transit amplifying cell | 3 studies | 31% ± 21% | |
interneuron | 3 studies | 39% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 5236.82 | 459 / 459 | 100% | 66.00 | 1118 / 1118 |
esophagus | 100% | 4778.99 | 1445 / 1445 | 100% | 42.98 | 183 / 183 |
ovary | 100% | 6857.81 | 180 / 180 | 100% | 35.98 | 430 / 430 |
prostate | 100% | 5717.67 | 245 / 245 | 100% | 50.72 | 502 / 502 |
uterus | 100% | 5460.95 | 170 / 170 | 100% | 53.31 | 459 / 459 |
lung | 100% | 4541.18 | 578 / 578 | 100% | 45.47 | 1154 / 1155 |
thymus | 100% | 6116.83 | 653 / 653 | 100% | 56.87 | 604 / 605 |
brain | 100% | 2584.66 | 2637 / 2642 | 100% | 46.20 | 705 / 705 |
kidney | 100% | 4774.67 | 89 / 89 | 100% | 39.55 | 899 / 901 |
stomach | 100% | 3605.57 | 359 / 359 | 100% | 27.93 | 285 / 286 |
bladder | 100% | 4930.14 | 21 / 21 | 99% | 41.86 | 501 / 504 |
pancreas | 99% | 2317.60 | 326 / 328 | 99% | 41.98 | 177 / 178 |
intestine | 100% | 4588.75 | 966 / 966 | 98% | 28.44 | 519 / 527 |
skin | 100% | 6415.42 | 1809 / 1809 | 98% | 41.47 | 464 / 472 |
liver | 100% | 3674.42 | 226 / 226 | 98% | 25.12 | 397 / 406 |
adrenal gland | 100% | 7493.41 | 258 / 258 | 97% | 37.84 | 224 / 230 |
adipose | 100% | 4968.14 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5784.15 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 65.75 | 29 / 29 |
spleen | 100% | 4826.71 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 51.51 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 35.00 | 1 / 1 |
heart | 99% | 2671.78 | 850 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 30.64 | 74 / 80 |
muscle | 82% | 1008.02 | 656 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 67% | 2161.70 | 627 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048013 | Biological process | ephrin receptor signaling pathway |
GO_0097150 | Biological process | neuronal stem cell population maintenance |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0006338 | Biological process | chromatin remodeling |
GO_1902459 | Biological process | positive regulation of stem cell population maintenance |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0045596 | Biological process | negative regulation of cell differentiation |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0000902 | Biological process | cell morphogenesis |
GO_0009410 | Biological process | response to xenobiotic stimulus |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0140288 | Cellular component | GBAF complex |
GO_0071564 | Cellular component | npBAF complex |
GO_0016514 | Cellular component | SWI/SNF complex |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0030374 | Molecular function | nuclear receptor coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SS18 |
Protein name | SS18 subunit of BAF chromatin remodeling complex (cDNA FLJ58120, highly similar to SSXT protein) SS18 protein SS18 subunit of BAF chromatin remodeling complex Synovial sarcoma translocation, chromosome 18 Synovial sarcoma translocation, chromosome 18 (cDNA FLJ57021, highly similar to SSXT protein) (cDNA, FLJ79201, highly similar to SSXT protein) Protein SSXT (Protein SYT) (Synovial sarcoma translocated to X chromosome protein) |
Synonyms | SSXT SYT hCG_37175 |
Description | FUNCTION: Appears to function synergistically with RBM14 as a transcriptional coactivator. Isoform 1 and isoform 2 function in nuclear receptor coactivation. Isoform 1 and isoform 2 function in general transcriptional coactivation. Component of SWI/SNF chromatin remodeling subcomplex GBAF that carries out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner . . |
Accessions | ENST00000577572.5 ENST00000577636.5 ENST00000582448.5 J3KT22 J3KT74 ENST00000539244.6 ENST00000415083.7 [Q15532-1] ENST00000579640.5 ENST00000580751.5 ENST00000579061.5 ENST00000581021.5 ENST00000578954.5 ENST00000585121.5 F5GWN1 J3QLJ7 J3QQW6 Q6FGL9 Q4VAX2 J3KRP6 J3QQM2 ENST00000582792.5 X6R3J2 ENST00000584083.5 Q4VAX0 ENST00000542420.6 ENST00000580642.2 J3QSG1 J3QQW2 Q15532 ENST00000581570.5 ENST00000269137.11 [Q15532-2] B4DLD3 J3QQX5 J3QS72 ENST00000578700.5 J3QSB3 ENST00000269138.9 |