Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 4 studies | 17% ± 1% | |
epithelial cell | 3 studies | 20% ± 1% | |
endothelial cell | 3 studies | 19% ± 3% | |
neuron | 3 studies | 34% ± 19% | |
oligodendrocyte | 3 studies | 22% ± 5% | |
microglial cell | 3 studies | 24% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 25% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 277.70 | 245 / 245 | 100% | 10.60 | 502 / 502 |
thymus | 100% | 241.15 | 653 / 653 | 100% | 11.94 | 605 / 605 |
brain | 100% | 201.12 | 2639 / 2642 | 100% | 11.27 | 705 / 705 |
ovary | 100% | 227.01 | 180 / 180 | 100% | 10.20 | 429 / 430 |
uterus | 100% | 202.77 | 170 / 170 | 100% | 8.84 | 457 / 459 |
intestine | 100% | 197.77 | 965 / 966 | 99% | 12.91 | 524 / 527 |
pancreas | 99% | 118.00 | 325 / 328 | 100% | 7.11 | 178 / 178 |
breast | 100% | 194.06 | 459 / 459 | 99% | 6.92 | 1106 / 1118 |
bladder | 100% | 197.57 | 21 / 21 | 99% | 10.35 | 498 / 504 |
adrenal gland | 100% | 404.68 | 258 / 258 | 99% | 8.99 | 227 / 230 |
stomach | 100% | 144.94 | 358 / 359 | 99% | 10.79 | 283 / 286 |
lung | 99% | 163.82 | 570 / 578 | 100% | 9.48 | 1151 / 1155 |
kidney | 100% | 188.73 | 89 / 89 | 98% | 5.83 | 882 / 901 |
skin | 100% | 157.33 | 1803 / 1809 | 98% | 6.63 | 463 / 472 |
esophagus | 100% | 151.63 | 1442 / 1445 | 96% | 5.81 | 176 / 183 |
liver | 91% | 59.66 | 205 / 226 | 70% | 2.96 | 286 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.97 | 29 / 29 |
spleen | 100% | 413.80 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 7.64 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.46 | 1 / 1 |
peripheral blood | 100% | 304.16 | 928 / 929 | 0% | 0 | 0 / 0 |
adipose | 100% | 169.21 | 1202 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 302.19 | 800 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 131.27 | 1327 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 8.04 | 79 / 80 |
heart | 98% | 206.31 | 848 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000042 | Biological process | negative regulation of double-strand break repair via homologous recombination |
GO_0006281 | Biological process | DNA repair |
GO_0002208 | Biological process | somatic diversification of immunoglobulins involved in immune response |
GO_0045830 | Biological process | positive regulation of isotype switching |
GO_2001034 | Biological process | positive regulation of double-strand break repair via nonhomologous end joining |
GO_0043247 | Biological process | telomere maintenance in response to DNA damage |
GO_0005694 | Cellular component | chromosome |
GO_0000785 | Cellular component | chromatin |
GO_0035861 | Cellular component | site of double-strand break |
GO_0005515 | Molecular function | protein binding |
Gene name | SHLD1 |
Protein name | Shieldin complex subunit 1 Alternative protein C20orf196 Shieldin complex subunit 1 (RINN1-REV7-interacting novel NHEJ regulator 3) (Shield complex subunit 1) |
Synonyms | RINN3 C20orf196 |
Description | FUNCTION: Component of the shieldin complex, which plays an important role in repair of DNA double-stranded breaks (DSBs). During G1 and S phase of the cell cycle, the complex functions downstream of TP53BP1 to promote non-homologous end joining (NHEJ) and suppress DNA end resection. Mediates various NHEJ-dependent processes including immunoglobulin class-switch recombination, and fusion of unprotected telomeres. . |
Accessions | A0A0A0MSQ5 ENST00000303142.11 [Q8IYI0-1] L8EBE3 Q5TGA6 Q5TGB0 ENST00000378979.8 ENST00000445603.1 ENST00000442185.1 Q8IYI0 |