Insufficient scRNA-seq data for expression of DBX1 at single-cell level.
Insufficient scRNA-seq data for expression of DBX1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 49% | 1.19 | 318 / 653 | 4% | 0.18 | 23 / 605 |
intestine | 31% | 0.64 | 302 / 966 | 3% | 0.06 | 14 / 527 |
blood vessel | 29% | 0.56 | 381 / 1335 | 0% | 0 | 0 / 0 |
liver | 27% | 0.50 | 61 / 226 | 1% | 0.01 | 3 / 406 |
prostate | 25% | 0.51 | 62 / 245 | 0% | 0 | 0 / 502 |
uterus | 21% | 0.28 | 35 / 170 | 4% | 0.92 | 20 / 459 |
brain | 22% | 0.46 | 588 / 2642 | 1% | 0.04 | 5 / 705 |
stomach | 16% | 0.24 | 57 / 359 | 5% | 0.10 | 14 / 286 |
spleen | 20% | 0.38 | 49 / 241 | 0% | 0 | 0 / 0 |
breast | 20% | 0.34 | 91 / 459 | 0% | 0.01 | 5 / 1118 |
pancreas | 18% | 0.29 | 58 / 328 | 1% | 0.02 | 1 / 178 |
heart | 18% | 0.28 | 156 / 861 | 0% | 0 | 0 / 0 |
esophagus | 14% | 0.23 | 208 / 1445 | 3% | 0.04 | 5 / 183 |
skin | 16% | 0.27 | 294 / 1809 | 0% | 0.00 | 1 / 472 |
lung | 13% | 0.19 | 75 / 578 | 3% | 0.09 | 30 / 1155 |
adrenal gland | 10% | 0.17 | 27 / 258 | 4% | 1.39 | 10 / 230 |
adipose | 13% | 0.21 | 152 / 1204 | 0% | 0 | 0 / 0 |
kidney | 10% | 0.16 | 9 / 89 | 1% | 0.03 | 13 / 901 |
ovary | 11% | 0.22 | 19 / 180 | 1% | 0.01 | 3 / 430 |
muscle | 11% | 0.19 | 85 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 9% | 0.14 | 85 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 9% | 0.14 | 4 / 45 |
bladder | 0% | 0 | 0 / 21 | 1% | 0.02 | 6 / 504 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0021515 | Biological process | cell differentiation in spinal cord |
GO_0021521 | Biological process | ventral spinal cord interneuron specification |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | DBX1 |
Protein name | Homeobox protein DBX1 (Developing brain homeobox protein 1) |
Synonyms | |
Description | FUNCTION: Could have a role in patterning the central nervous system during embryogenesis. Has a key role in regulating the distinct phenotypic features that distinguish two major classes of ventral interneurons, V0 and V1 neurons. Regulates the transcription factor profile, neurotransmitter phenotype, intraspinal migratory path and axonal trajectory of V0 neurons, features that differentiate them from an adjacent set of V1 neurons (By similarity). . |
Accessions | ENST00000524983.3 A6NMT0 |