Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 28% ± 10% | |
fibroblast | 10 studies | 24% ± 6% | |
astrocyte | 10 studies | 34% ± 15% | |
glutamatergic neuron | 9 studies | 39% ± 24% | |
GABAergic neuron | 7 studies | 38% ± 19% | |
oligodendrocyte | 7 studies | 27% ± 9% | |
epithelial cell | 6 studies | 30% ± 14% | |
adipocyte | 6 studies | 32% ± 8% | |
macrophage | 6 studies | 23% ± 8% | |
microglial cell | 5 studies | 25% ± 6% | |
oligodendrocyte precursor cell | 5 studies | 32% ± 12% | |
monocyte | 4 studies | 23% ± 6% | |
lymphocyte | 4 studies | 22% ± 7% | |
endothelial cell of lymphatic vessel | 4 studies | 26% ± 10% | |
smooth muscle cell | 4 studies | 19% ± 2% | |
interneuron | 4 studies | 46% ± 24% | |
neuron | 3 studies | 29% ± 9% | |
myeloid cell | 3 studies | 18% ± 1% | |
cardiac muscle cell | 3 studies | 19% ± 1% | |
ciliated cell | 3 studies | 23% ± 4% | |
endothelial cell of artery | 3 studies | 23% ± 4% | |
ependymal cell | 3 studies | 29% ± 13% | |
pericyte | 3 studies | 24% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3510.47 | 1445 / 1445 | 100% | 36.87 | 183 / 183 |
lung | 100% | 3809.91 | 578 / 578 | 100% | 20.91 | 1154 / 1155 |
breast | 100% | 4866.30 | 459 / 459 | 99% | 32.08 | 1112 / 1118 |
pancreas | 99% | 1598.29 | 326 / 328 | 99% | 14.75 | 177 / 178 |
uterus | 100% | 3982.78 | 170 / 170 | 98% | 19.37 | 449 / 459 |
brain | 99% | 2257.25 | 2605 / 2642 | 99% | 17.91 | 699 / 705 |
thymus | 100% | 3763.90 | 653 / 653 | 98% | 16.31 | 591 / 605 |
ovary | 100% | 5937.83 | 180 / 180 | 98% | 13.68 | 420 / 430 |
bladder | 100% | 3763.05 | 21 / 21 | 98% | 16.48 | 492 / 504 |
stomach | 100% | 2882.17 | 359 / 359 | 98% | 19.01 | 279 / 286 |
prostate | 100% | 3365.59 | 245 / 245 | 97% | 14.93 | 487 / 502 |
intestine | 100% | 3695.30 | 966 / 966 | 97% | 16.04 | 509 / 527 |
adrenal gland | 100% | 3185.43 | 258 / 258 | 96% | 14.16 | 220 / 230 |
liver | 100% | 1620.82 | 226 / 226 | 94% | 12.36 | 381 / 406 |
kidney | 100% | 2030.64 | 89 / 89 | 93% | 13.31 | 842 / 901 |
skin | 100% | 4430.91 | 1809 / 1809 | 93% | 20.65 | 440 / 472 |
adipose | 100% | 5379.12 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4624.57 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2942.28 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3416.90 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.21 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 98% | 18.17 | 44 / 45 |
heart | 97% | 2209.34 | 838 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 2937.39 | 880 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 11.18 | 23 / 29 |
eye | 0% | 0 | 0 / 0 | 57% | 5.33 | 46 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051028 | Biological process | mRNA transport |
GO_0051292 | Biological process | nuclear pore complex assembly |
GO_0051301 | Biological process | cell division |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0015031 | Biological process | protein transport |
GO_0032465 | Biological process | regulation of cytokinesis |
GO_0005643 | Cellular component | nuclear pore |
GO_0000776 | Cellular component | kinetochore |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005635 | Cellular component | nuclear envelope |
GO_0016363 | Cellular component | nuclear matrix |
GO_0016604 | Cellular component | nuclear body |
GO_0005829 | Cellular component | cytosol |
GO_0031080 | Cellular component | nuclear pore outer ring |
GO_0000785 | Cellular component | chromatin |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
Gene name | AHCTF1 |
Protein name | AT-hook containing transcription factor 1 Protein ELYS (Embryonic large molecule derived from yolk sac) (Protein MEL-28) (Putative AT-hook-containing transcription factor 1) |
Synonyms | MSTP108 ELYS TMBS62 |
Description | FUNCTION: Required for the assembly of a functional nuclear pore complex (NPC) on the surface of chromosomes as nuclei form at the end of mitosis. May initiate NPC assembly by binding to chromatin and recruiting the Nup107-160 subcomplex of the NPC. Also required for the localization of the Nup107-160 subcomplex of the NPC to the kinetochore during mitosis and for the completion of cytokinesis. . |
Accessions | ENST00000648844.2 [Q8WYP5-1] ENST00000498601.1 ENST00000366508.5 [Q8WYP5-2] Q8WYP5 ENST00000326225.3 [Q8WYP5-3] H7C4S1 |