Name | Number of supported studies | Average coverage | |
---|---|---|---|
retina horizontal cell | 5 studies | 32% ± 8% | |
Mueller cell | 3 studies | 18% ± 2% |
Insufficient scRNA-seq data for expression of HMX1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 95% | 73.58 | 2519 / 2642 | 73% | 13.38 | 512 / 705 |
intestine | 27% | 5.94 | 261 / 966 | 1% | 0.04 | 4 / 527 |
tonsil | 0% | 0 | 0 / 0 | 22% | 2.27 | 10 / 45 |
breast | 14% | 2.57 | 62 / 459 | 3% | 0.18 | 32 / 1118 |
esophagus | 2% | 0.23 | 22 / 1445 | 13% | 1.29 | 23 / 183 |
adrenal gland | 2% | 1.30 | 6 / 258 | 11% | 2.31 | 26 / 230 |
uterus | 1% | 0.12 | 1 / 170 | 10% | 1.53 | 45 / 459 |
skin | 7% | 1.14 | 118 / 1809 | 3% | 0.32 | 12 / 472 |
eye | 0% | 0 | 0 / 0 | 8% | 0.67 | 6 / 80 |
lung | 0% | 0 | 0 / 578 | 7% | 0.55 | 78 / 1155 |
stomach | 4% | 0.65 | 15 / 359 | 2% | 0.10 | 5 / 286 |
bladder | 0% | 0 | 0 / 21 | 4% | 0.57 | 21 / 504 |
prostate | 1% | 0.18 | 3 / 245 | 3% | 0.18 | 14 / 502 |
adipose | 4% | 0.86 | 48 / 1204 | 0% | 0 | 0 / 0 |
heart | 3% | 0.48 | 26 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 2% | 0.37 | 28 / 1335 | 0% | 0 | 0 / 0 |
thymus | 2% | 0.26 | 10 / 653 | 0% | 0.02 | 3 / 605 |
ovary | 1% | 0.07 | 1 / 180 | 1% | 0.06 | 6 / 430 |
liver | 0% | 0 | 0 / 226 | 1% | 0.07 | 6 / 406 |
muscle | 1% | 0.26 | 10 / 803 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 1% | 0.05 | 1 / 178 |
kidney | 0% | 0 | 0 / 89 | 0% | 0.06 | 3 / 901 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000977 | Molecular function | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
Gene name | HMX1 |
Protein name | H6 family homeobox 1 (Homeobox protein HMX1) Homeobox protein HMX1 (Homeobox protein H6) |
Synonyms | H6 |
Description | FUNCTION: DNA-binding protein that binds to the 5'-CAAG-3' core sequence. May function as a transcriptional repressor. Seems to act as a transcriptional antagonist of NKX2-5. May play an important role in the development of craniofacial structures such as the eye and ear. . |
Accessions | F1T0J4 Q9NP08 ENST00000506970.2 ENST00000400677.5 ENST00000673238.1 |