Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| B cell | 13 studies | 23% ± 9% | |
| naive B cell | 11 studies | 24% ± 6% | |
| glutamatergic neuron | 4 studies | 28% ± 10% | |
| memory B cell | 4 studies | 22% ± 5% | |
| germinal center B cell | 3 studies | 37% ± 8% | |
| GABAergic neuron | 3 studies | 27% ± 9% | |
| interneuron | 3 studies | 37% ± 16% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 3 studies | 30% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 98% | 508.18 | 2598 / 2642 | 99% | 6.77 | 699 / 705 |
| ovary | 99% | 622.26 | 179 / 180 | 69% | 2.16 | 296 / 430 |
| pancreas | 99% | 384.73 | 324 / 328 | 66% | 1.84 | 118 / 178 |
| uterus | 98% | 419.58 | 166 / 170 | 60% | 4.61 | 277 / 459 |
| kidney | 94% | 264.75 | 84 / 89 | 64% | 1.70 | 573 / 901 |
| skin | 88% | 160.92 | 1598 / 1809 | 68% | 3.35 | 323 / 472 |
| adrenal gland | 94% | 211.31 | 242 / 258 | 60% | 1.67 | 138 / 230 |
| lung | 94% | 210.15 | 543 / 578 | 54% | 1.70 | 626 / 1155 |
| esophagus | 79% | 155.83 | 1138 / 1445 | 63% | 1.85 | 115 / 183 |
| breast | 97% | 233.68 | 443 / 459 | 41% | 1.16 | 460 / 1118 |
| thymus | 96% | 263.67 | 630 / 653 | 38% | 1.30 | 228 / 605 |
| prostate | 98% | 286.94 | 239 / 245 | 26% | 0.40 | 129 / 502 |
| liver | 86% | 199.50 | 195 / 226 | 37% | 0.79 | 150 / 406 |
| bladder | 86% | 175.95 | 18 / 21 | 36% | 1.96 | 179 / 504 |
| intestine | 95% | 380.26 | 922 / 966 | 24% | 0.73 | 126 / 527 |
| stomach | 67% | 112.47 | 241 / 359 | 34% | 0.91 | 97 / 286 |
| spleen | 100% | 1374.26 | 241 / 241 | 0% | 0 | 0 / 0 |
| muscle | 100% | 747.82 | 801 / 803 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 97% | 24.19 | 28 / 29 |
| adipose | 92% | 227.03 | 1110 / 1204 | 0% | 0 | 0 / 0 |
| peripheral blood | 87% | 942.87 | 812 / 929 | 0% | 0 | 0 / 0 |
| blood vessel | 82% | 149.59 | 1089 / 1335 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 80% | 16.09 | 36 / 45 |
| heart | 59% | 92.13 | 506 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 20% | 0.32 | 16 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0034089 | Biological process | establishment of meiotic sister chromatid cohesion |
| GO_0007062 | Biological process | sister chromatid cohesion |
| GO_0007130 | Biological process | synaptonemal complex assembly |
| GO_0030893 | Cellular component | meiotic cohesin complex |
| GO_0000775 | Cellular component | chromosome, centromeric region |
| GO_0005730 | Cellular component | nucleolus |
| GO_0005615 | Cellular component | extracellular space |
| GO_0000795 | Cellular component | synaptonemal complex |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0000785 | Cellular component | chromatin |
| GO_0005634 | Cellular component | nucleus |
| GO_0003682 | Molecular function | chromatin binding |
| Gene name | STAG3 |
| Protein name | Cohesin subunit SA (SCC3 homolog) (Stromal antigen) Cohesin subunit SA-3 (SCC3 homolog 3) (Stromal antigen 3) (Stromalin-3) Stromal antigen 3 |
| Synonyms | hCG_2024106 |
| Description | FUNCTION: Meiosis specific component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The meiosis-specific cohesin complex probably replaces mitosis specific cohesin complex when it dissociates from chromatin during prophase I. . FUNCTION: Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. . FUNCTION: Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. . |
| Accessions | Q9UJ98 ENST00000416412.5 ENST00000422690.5 H7C0H6 ENST00000426455.5 [Q9UJ98-1] ENST00000615138.5 ENST00000412190.6 ENST00000317296.9 [Q9UJ98-1] ENST00000439782.1 C9JYW5 ENST00000394018.6 [Q9UJ98-3] C9J3T3 D6W5U7 C9JTG4 B2RU25 ENST00000620100.5 [Q9UJ98-3] |
