Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 11 studies | 25% ± 10% | |
astrocyte | 9 studies | 38% ± 18% | |
oligodendrocyte | 8 studies | 37% ± 15% | |
microglial cell | 5 studies | 24% ± 7% | |
oligodendrocyte precursor cell | 5 studies | 29% ± 11% | |
GABAergic neuron | 4 studies | 25% ± 11% | |
glutamatergic neuron | 4 studies | 30% ± 17% | |
epithelial cell | 4 studies | 30% ± 7% | |
ciliated cell | 4 studies | 18% ± 2% | |
non-classical monocyte | 3 studies | 19% ± 5% | |
myeloid cell | 3 studies | 25% ± 5% | |
smooth muscle cell | 3 studies | 23% ± 8% | |
interneuron | 3 studies | 35% ± 19% | |
basal cell | 3 studies | 24% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 8 studies | 31% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3994.62 | 1445 / 1445 | 100% | 18.84 | 183 / 183 |
prostate | 100% | 3731.52 | 245 / 245 | 100% | 16.27 | 502 / 502 |
intestine | 100% | 3536.79 | 966 / 966 | 100% | 12.26 | 526 / 527 |
skin | 100% | 4368.60 | 1809 / 1809 | 100% | 14.52 | 471 / 472 |
stomach | 100% | 2615.56 | 359 / 359 | 100% | 14.12 | 285 / 286 |
uterus | 100% | 4696.10 | 170 / 170 | 100% | 12.68 | 457 / 459 |
breast | 100% | 4931.53 | 459 / 459 | 100% | 18.28 | 1113 / 1118 |
ovary | 100% | 4994.57 | 180 / 180 | 100% | 14.83 | 428 / 430 |
lung | 100% | 4030.53 | 578 / 578 | 99% | 13.81 | 1146 / 1155 |
thymus | 100% | 3426.43 | 652 / 653 | 99% | 11.80 | 601 / 605 |
bladder | 100% | 3860.05 | 21 / 21 | 99% | 10.57 | 498 / 504 |
kidney | 100% | 2361.06 | 89 / 89 | 99% | 15.87 | 889 / 901 |
adrenal gland | 100% | 2013.79 | 257 / 258 | 98% | 10.35 | 226 / 230 |
brain | 98% | 2059.10 | 2585 / 2642 | 100% | 14.27 | 705 / 705 |
pancreas | 99% | 1648.51 | 324 / 328 | 99% | 14.24 | 176 / 178 |
liver | 98% | 1273.38 | 221 / 226 | 85% | 6.62 | 347 / 406 |
adipose | 100% | 4894.98 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5624.37 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 13.91 | 80 / 80 |
spleen | 100% | 2539.30 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 12.00 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.56 | 1 / 1 |
muscle | 100% | 2423.77 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2410.95 | 852 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 7.31 | 27 / 29 |
peripheral blood | 90% | 1496.28 | 833 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0019899 | Molecular function | enzyme binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0051019 | Molecular function | mitogen-activated protein kinase binding |
GO_0001223 | Molecular function | transcription coactivator binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0035497 | Molecular function | cAMP response element binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ATF7 |
Protein name | Activating transcription factor 7 Cyclic AMP-dependent transcription factor ATF-7 (cAMP-dependent transcription factor ATF-7) (Activating transcription factor 7) (Transcription factor ATF-A) |
Synonyms | ATFA |
Description | FUNCTION: Stress-responsive chromatin regulator that plays a role in various biological processes including innate immunological memory, adipocyte differentiation or telomerase regulation . In absence of stress, contributes to the formation of heterochromatin and heterochromatin-like structure by recruiting histone H3K9 tri- and di-methyltransferases thus silencing the transcription of target genes such as STAT1 in adipocytes, or genes involved in innate immunity in macrophages and adipocytes (By similarity). Stress induces ATF7 phosphorylation that disrupts interactions with histone methyltransferase and enhances the association with coactivators containing histone acetyltransferase and/or histone demethylase, leading to disruption of the heterochromatin-like structure and subsequently transcriptional activation (By similarity). In response to TNF-alpha, which is induced by various stresses, phosphorylated ATF7 and telomerase are released from telomeres leading to telomere shortening . Also plays a role in maintaining epithelial regenerative capacity and protecting against cell death during intestinal epithelial damage and repair (By similarity). .; FUNCTION: [Isoform 4]: Acts as a dominant repressor of the E-selectin/NF-ELAM1/delta-A promoter.; FUNCTION: [Isoform 5]: Acts as a negative regulator, inhibiting both ATF2 and ATF7 transcriptional activities. It may exert these effects by sequestrating in the cytoplasm the Thr-53 phosphorylating kinase, preventing activation. . |
Accessions | ENST00000588232.5 ENST00000591397.1 [P17544-5] K7ESA4 ENST00000456903.8 [P17544-6] ENST00000548446.6 [P17544-1] P17544 K7EKZ7 ENST00000588078.5 ENST00000551480.2 ENST00000548118.6 [P17544-5] F8VWG7 ENST00000420353.7 [P17544-6] |