LHX6 | OmnibusX

Name	Number of supported studies	Average coverage
vein endothelial cell	3 studies	30% ± 16%	Explore
endothelial cell	3 studies	18% ± 3%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of LHX6 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	1826.46	459 / 459	87%	3.67	976 / 1118
prostate	82%	393.74	202 / 245	92%	2.54	463 / 502
uterus	98%	625.96	166 / 170	72%	2.45	329 / 459
thymus	93%	535.51	608 / 653	71%	1.67	427 / 605
lung	89%	572.28	517 / 578	72%	2.10	834 / 1155
intestine	93%	502.04	896 / 966	61%	1.55	324 / 527
bladder	95%	866.57	20 / 21	58%	1.43	292 / 504
esophagus	84%	602.53	1221 / 1445	67%	2.14	122 / 183
ovary	60%	257.14	108 / 180	73%	2.07	316 / 430
stomach	60%	262.79	216 / 359	72%	2.03	206 / 286
skin	58%	266.81	1051 / 1809	72%	2.67	341 / 472
brain	71%	787.95	1881 / 2642	55%	2.23	387 / 705
kidney	48%	180.25	43 / 89	58%	2.38	525 / 901
adipose	100%	2167.71	1204 / 1204	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	1.35	1 / 1
pancreas	16%	40.09	52 / 328	84%	2.26	149 / 178
tonsil	0%	0	0 / 0	84%	2.92	38 / 45
heart	80%	386.87	687 / 861	0%	0	0 / 0
adrenal gland	20%	53.90	52 / 258	54%	1.22	125 / 230
blood vessel	58%	393.55	772 / 1335	0%	0	0 / 0
muscle	53%	159.65	422 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	30%	0.54	24 / 80
lymph node	0%	0	0 / 0	21%	0.28	6 / 29
liver	0%	2.23	1 / 226	11%	0.21	43 / 406
spleen	0%	0.83	1 / 241	0%	0	0 / 0
peripheral blood	0%	1.27	3 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0030182	Biological process	neuron differentiation
GO_0021884	Biological process	forebrain neuron development
GO_0021800	Biological process	cerebral cortex tangential migration
GO_0048469	Biological process	cell maturation
GO_0021853	Biological process	cerebral cortex GABAergic interneuron migration
GO_0021799	Biological process	cerebral cortex radially oriented cell migration
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0003700	Molecular function	DNA-binding transcription factor activity
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0005515	Molecular function	protein binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_0046872	Molecular function	metal ion binding

Gene name	LHX6
Protein name	LIM/homeobox protein Lhx6 (LIM homeobox protein 6) (LIM/homeobox protein Lhx6.1) LIM homeobox 6
Synonyms	LHX6.1
Description	FUNCTION: Probable transcription factor required for the expression of a subset of genes involved in interneurons migration and development. Functions in the specification of cortical interneuron subtypes and in the migration of GABAergic interneuron precursors from the subpallium to the cerebral cortex (By similarity). .
Accessions	ENST00000541397.2 [Q9UPM6-5] ENST00000340587.7 [Q9UPM6-4] ENST00000560485.1 H0YKH7 ENST00000373754.6 [Q9UPM6-2] ENST00000394319.9 [Q9UPM6-3] ENST00000559895.5 [Q9UPM6-6] ENST00000373755.6 [Q9UPM6-1] H0YMY8 ENST00000482062.1 Q9UPM6 Q3SY65 ENST00000464484.3 H0YMH3

LHX6 report