Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| astrocyte | 9 studies | 29% ± 14% | |
| interneuron | 5 studies | 30% ± 14% | |
| glutamatergic neuron | 4 studies | 33% ± 13% | |
| GABAergic neuron | 3 studies | 39% ± 10% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 6 studies | 27% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 66% | 2460.99 | 1756 / 2642 | 96% | 49.03 | 678 / 705 |
| esophagus | 22% | 111.83 | 324 / 1445 | 9% | 0.60 | 17 / 183 |
| tonsil | 0% | 0 | 0 / 0 | 31% | 2.81 | 14 / 45 |
| thymus | 4% | 23.53 | 27 / 653 | 14% | 5.94 | 83 / 605 |
| ovary | 7% | 21.07 | 12 / 180 | 9% | 0.84 | 38 / 430 |
| uterus | 0% | 0 | 0 / 170 | 12% | 2.47 | 54 / 459 |
| lymph node | 0% | 0 | 0 / 0 | 7% | 0.75 | 2 / 29 |
| skin | 0% | 0.88 | 4 / 1809 | 5% | 0.35 | 22 / 472 |
| lung | 0% | 0 | 0 / 578 | 3% | 0.39 | 34 / 1155 |
| breast | 0% | 0 | 0 / 459 | 2% | 0.14 | 26 / 1118 |
| stomach | 0% | 0 | 0 / 359 | 2% | 0.11 | 6 / 286 |
| bladder | 0% | 0 | 0 / 21 | 2% | 0.10 | 8 / 504 |
| liver | 0% | 0 | 0 / 226 | 1% | 0.17 | 5 / 406 |
| prostate | 0% | 0 | 0 / 245 | 1% | 0.10 | 5 / 502 |
| intestine | 0% | 0 | 0 / 966 | 1% | 0.05 | 5 / 527 |
| kidney | 0% | 0 | 0 / 89 | 1% | 0.07 | 6 / 901 |
| adrenal gland | 0% | 0 | 0 / 258 | 0% | 0.13 | 1 / 230 |
| peripheral blood | 0% | 1.69 | 3 / 929 | 0% | 0 | 0 / 0 |
| blood vessel | 0% | 1.96 | 4 / 1335 | 0% | 0 | 0 / 0 |
| heart | 0% | 0.28 | 1 / 861 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| pancreas | 0% | 0 | 0 / 328 | 0% | 0 | 0 / 178 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0002052 | Biological process | positive regulation of neuroblast proliferation |
| GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
| GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
| GO_0009953 | Biological process | dorsal/ventral pattern formation |
| GO_0045665 | Biological process | negative regulation of neuron differentiation |
| GO_0048664 | Biological process | neuron fate determination |
| GO_0007346 | Biological process | regulation of mitotic cell cycle |
| GO_0021852 | Biological process | pyramidal neuron migration to cerebral cortex |
| GO_0042472 | Biological process | inner ear morphogenesis |
| GO_0007420 | Biological process | brain development |
| GO_0045666 | Biological process | positive regulation of neuron differentiation |
| GO_0016199 | Biological process | axon midline choice point recognition |
| GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
| GO_0045787 | Biological process | positive regulation of cell cycle |
| GO_0007405 | Biological process | neuroblast proliferation |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0000785 | Cellular component | chromatin |
| GO_0005634 | Cellular component | nucleus |
| GO_0003677 | Molecular function | DNA binding |
| GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | FOXG1 |
| Protein name | Forkhead box protein G1 (Brain factor 1) (BF-1) (BF1) (Brain factor 2) (BF-2) (BF2) (hBF-2) (Forkhead box protein G1A) (Forkhead box protein G1B) (Forkhead box protein G1C) (Forkhead-related protein FKHL1) (HFK1) (Forkhead-related protein FKHL2) (HFK2) (Forkhead-related protein FKHL3) (HFK3) |
| Synonyms | FOXG1A FOXG1C FKHL1 FKHL2 FKH2 FKHL4 FKHL3 FOXG1B |
| Description | FUNCTION: Transcription repression factor which plays an important role in the establishment of the regional subdivision of the developing brain and in the development of the telencephalon. . |
| Accessions | ENST00000706482.1 ENST00000313071.7 P55316 |