Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 29% ± 14% | |
oligodendrocyte precursor cell | 9 studies | 26% ± 11% | |
GABAergic neuron | 7 studies | 38% ± 17% | |
glutamatergic neuron | 7 studies | 41% ± 23% | |
interneuron | 6 studies | 39% ± 18% | |
neuron | 6 studies | 37% ± 12% | |
epithelial cell | 6 studies | 38% ± 16% | |
ciliated cell | 6 studies | 28% ± 8% | |
astrocyte | 6 studies | 28% ± 8% | |
abnormal cell | 4 studies | 22% ± 9% | |
macrophage | 4 studies | 25% ± 7% | |
microglial cell | 4 studies | 23% ± 6% | |
oligodendrocyte | 4 studies | 20% ± 3% | |
granule cell | 3 studies | 23% ± 4% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 25% ± 4% | |
fibroblast | 3 studies | 27% ± 10% | |
basal cell | 3 studies | 35% ± 14% | |
goblet cell | 3 studies | 33% ± 19% | |
transit amplifying cell | 3 studies | 35% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 4308.14 | 21 / 21 | 100% | 93.04 | 504 / 504 |
breast | 100% | 4040.70 | 459 / 459 | 100% | 73.76 | 1118 / 1118 |
esophagus | 100% | 3884.76 | 1445 / 1445 | 100% | 65.41 | 183 / 183 |
lung | 100% | 3467.70 | 578 / 578 | 100% | 62.10 | 1155 / 1155 |
ovary | 100% | 5512.01 | 180 / 180 | 100% | 68.52 | 430 / 430 |
prostate | 100% | 4652.98 | 245 / 245 | 100% | 72.57 | 502 / 502 |
uterus | 100% | 4997.92 | 170 / 170 | 100% | 88.54 | 459 / 459 |
thymus | 100% | 3957.38 | 653 / 653 | 100% | 56.14 | 603 / 605 |
stomach | 100% | 3253.62 | 359 / 359 | 100% | 60.54 | 285 / 286 |
intestine | 100% | 4326.11 | 966 / 966 | 100% | 67.90 | 525 / 527 |
pancreas | 100% | 2591.78 | 328 / 328 | 99% | 54.75 | 177 / 178 |
skin | 100% | 4796.89 | 1809 / 1809 | 99% | 77.08 | 469 / 472 |
brain | 99% | 2963.34 | 2624 / 2642 | 100% | 71.29 | 705 / 705 |
kidney | 100% | 2905.63 | 89 / 89 | 97% | 31.92 | 871 / 901 |
adrenal gland | 100% | 4138.93 | 258 / 258 | 90% | 26.51 | 206 / 230 |
liver | 100% | 1649.87 | 225 / 226 | 82% | 19.53 | 333 / 406 |
adipose | 100% | 3483.36 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 50.55 | 29 / 29 |
muscle | 100% | 3820.55 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3565.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 70.72 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 81.05 | 1 / 1 |
blood vessel | 100% | 3019.68 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 2165.33 | 841 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 39.59 | 76 / 80 |
peripheral blood | 76% | 2412.72 | 707 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0002052 | Biological process | positive regulation of neuroblast proliferation |
GO_0010569 | Biological process | regulation of double-strand break repair via homologous recombination |
GO_0010976 | Biological process | positive regulation of neuron projection development |
GO_0090308 | Biological process | regulation of DNA methylation-dependent heterochromatin formation |
GO_0034644 | Biological process | cellular response to UV |
GO_0055001 | Biological process | muscle cell development |
GO_0140861 | Biological process | DNA repair-dependent chromatin remodeling |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0032880 | Biological process | regulation of protein localization |
GO_0006482 | Biological process | protein demethylation |
GO_2000648 | Biological process | positive regulation of stem cell proliferation |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0043433 | Biological process | negative regulation of DNA-binding transcription factor activity |
GO_0006338 | Biological process | chromatin remodeling |
GO_0071480 | Biological process | cellular response to gamma radiation |
GO_0042551 | Biological process | neuron maturation |
GO_0071320 | Biological process | cellular response to cAMP |
GO_2000179 | Biological process | positive regulation of neural precursor cell proliferation |
GO_0060992 | Biological process | response to fungicide |
GO_0046098 | Biological process | guanine metabolic process |
GO_0043392 | Biological process | negative regulation of DNA binding |
GO_0120162 | Biological process | positive regulation of cold-induced thermogenesis |
GO_0060765 | Biological process | regulation of androgen receptor signaling pathway |
GO_0010718 | Biological process | positive regulation of epithelial to mesenchymal transition |
GO_1902166 | Biological process | negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator |
GO_0031398 | Biological process | positive regulation of protein ubiquitination |
GO_0021987 | Biological process | cerebral cortex development |
GO_0045793 | Biological process | positive regulation of cell size |
GO_0032091 | Biological process | negative regulation of protein binding |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0043518 | Biological process | negative regulation of DNA damage response, signal transduction by p53 class mediator |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_1990391 | Cellular component | DNA repair complex |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0000785 | Cellular component | chromatin |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0005634 | Cellular component | nucleus |
GO_0008134 | Molecular function | transcription factor binding |
GO_0019899 | Molecular function | enzyme binding |
GO_0032454 | Molecular function | histone H3K9 demethylase activity |
GO_0032451 | Molecular function | demethylase activity |
GO_0061752 | Molecular function | telomeric repeat-containing RNA binding |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0050660 | Molecular function | flavin adenine dinucleotide binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0042162 | Molecular function | telomeric DNA binding |
GO_0140682 | Molecular function | FAD-dependent H3K4me/H3K4me3 demethylase activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0061629 | Molecular function | RNA polymerase II-specific DNA-binding transcription factor binding |
GO_0032452 | Molecular function | histone demethylase activity |
GO_0016491 | Molecular function | oxidoreductase activity |
GO_0032453 | Molecular function | histone H3K4 demethylase activity |
GO_0002039 | Molecular function | p53 binding |
GO_0050681 | Molecular function | nuclear androgen receptor binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0043426 | Molecular function | MRF binding |
GO_0030374 | Molecular function | nuclear receptor coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | KDM1A |
Protein name | Lysine-specific histone demethylase (EC 1.14.99.66) Lysine demethylase 1A Lysine-specific histone demethylase 1A (EC 1.14.99.66) (BRAF35-HDAC complex protein BHC110) (Flavin-containing amine oxidase domain-containing protein 2) ([histone H3]-dimethyl-L-lysine(4) FAD-dependent demethylase 1A) |
Synonyms | KDM1 LSD1 KIAA0601 AOF2 |
Description | FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context . Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed . Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me . May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity . Also acts as a coactivator of androgen receptor (AR)-dependent transcription, by being recruited to AR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression. The presence of PRKCB in AR-containing complexes, which mediates phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag that prevents demethylation H3K4me, prevents H3K4me demethylase activity of KDM1A . Demethylates di-methylated 'Lys-370' of p53/TP53 which prevents interaction of p53/TP53 with TP53BP1 and represses p53/TP53-mediated transcriptional activation. Demethylates and stabilizes the DNA methylase DNMT1 . Demethylates methylated 'Lys-42' and methylated 'Lys-117' of SOX2 . Required for gastrulation during embryogenesis. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Effector of SNAI1-mediated transcription repression of E-cadherin/CDH1, CDN7 and KRT8. Required for the maintenance of the silenced state of the SNAI1 target genes E-cadherin/CDH1 and CDN7 . . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . FUNCTION: Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me. May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. . |
Accessions | ENST00000693156.1 ENST00000689853.1 ENST00000494920.1 A0A8I5KT29 A0A8I5KUU0 A0A8I5KRB8 A0A8I5KVZ4 A0A8I5KQU6 ENST00000692209.1 A0A8I5KPV0 ENST00000356634.7 [O60341-1] ENST00000692975.1 A0A8I5QJX1 ENST00000691682.1 A0A8I5KSH0 A0A8I5QKM3 ENST00000691813.1 ENST00000690627.1 ENST00000691256.1 A0A8I5KRX9 ENST00000465864.2 A0A8I5KSI8 R4GMP9 ENST00000692056.1 ENST00000686270.1 ENST00000692853.1 ENST00000400181.9 [O60341-2] ENST00000686771.1 ENST00000686339.1 O60341 ENST00000686934.1 A0A8I5KRF4 A0A8I5KV76 A0A8I5KTR5 A0A8I5KXU4 ENST00000685102.1 ENST00000691694.1 ENST00000691404.1 A0A8I5QJJ5 A0A8I5KRC9 ENST00000688680.1 ENST00000685243.1 A0A8I5QJR3 R4GMQ1 |