GSX2 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of GSX2 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	81%	25.65	2142 / 2642	37%	3.70	262 / 705
skin	55%	15.39	992 / 1809	0%	0.00	1 / 472
lymph node	0%	0	0 / 0	10%	0.20	3 / 29
thymus	1%	0.10	5 / 653	9%	0.24	54 / 605
peripheral blood	10%	6.93	89 / 929	0%	0	0 / 0
bladder	5%	0.29	1 / 21	1%	0.04	5 / 504
heart	6%	0.50	49 / 861	0%	0	0 / 0
blood vessel	5%	0.48	72 / 1335	0%	0	0 / 0
stomach	4%	0.40	16 / 359	0%	0.00	1 / 286
kidney	3%	0.34	3 / 89	1%	0.02	10 / 901
spleen	4%	0.32	10 / 241	0%	0	0 / 0
uterus	2%	0.15	3 / 170	2%	0.03	8 / 459
intestine	3%	0.27	31 / 966	0%	0.02	1 / 527
breast	3%	0.23	14 / 459	0%	0.00	2 / 1118
liver	3%	0.17	6 / 226	0%	0.00	1 / 406
tonsil	0%	0	0 / 0	2%	0.09	1 / 45
esophagus	1%	0.08	11 / 1445	1%	0.02	2 / 183
adipose	2%	0.16	22 / 1204	0%	0	0 / 0
lung	0%	0.01	1 / 578	1%	0.02	12 / 1155
pancreas	0%	0	0 / 328	1%	0.03	2 / 178
ovary	1%	0.04	1 / 180	0%	0.01	1 / 430
adrenal gland	1%	0.06	2 / 258	0%	0	0 / 230
prostate	0%	0.02	1 / 245	0%	0	0 / 502
muscle	0%	0.02	2 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0002087	Biological process	regulation of respiratory gaseous exchange by nervous system process
GO_0021527	Biological process	spinal cord association neuron differentiation
GO_0021575	Biological process	hindbrain morphogenesis
GO_0007219	Biological process	Notch signaling pathway
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0021978	Biological process	telencephalon regionalization
GO_0048665	Biological process	neuron fate specification
GO_0021798	Biological process	forebrain dorsal/ventral pattern formation
GO_0097154	Biological process	GABAergic neuron differentiation
GO_0060163	Biological process	subpallium neuron fate commitment
GO_0030334	Biological process	regulation of cell migration
GO_0048714	Biological process	positive regulation of oligodendrocyte differentiation
GO_0021889	Biological process	olfactory bulb interneuron differentiation
GO_0045747	Biological process	positive regulation of Notch signaling pathway
GO_0048853	Biological process	forebrain morphogenesis
GO_0005737	Cellular component	cytoplasm
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding

Gene name	GSX2
Protein name	GS homeobox 2 GS homeobox 2 (Genetic-screened homeobox 2) (Homeobox protein GSH-2)
Synonyms	GSH2
Description	FUNCTION: Transcription factor that binds 5'-CNAATTAG-3' DNA sequence and regulates the expression of numerous genes including genes important for brain development . During telencephalic development, causes ventralization of pallial progenitors and, depending on the developmental stage, specifies different neuronal fates. At early stages, necessary and sufficient to correctly specify the ventral lateral ganglionic eminence (LGE) and its major derivatives, the striatal projection neurons. At later stages, may specify LGE progenitors toward dorsal LGE fates, including olfactory bulb interneurons (By similarity). .
Accessions	Q9BZM3 D6R903 ENST00000503800.1 B2LYG3 ENST00000326902.7

GSX2 report