Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1592.93 | 1445 / 1445 | 100% | 74.32 | 183 / 183 |
liver | 100% | 1652.26 | 226 / 226 | 100% | 107.05 | 406 / 406 |
ovary | 100% | 993.73 | 180 / 180 | 100% | 87.74 | 430 / 430 |
brain | 100% | 1400.63 | 2638 / 2642 | 100% | 72.48 | 705 / 705 |
prostate | 100% | 2382.66 | 245 / 245 | 100% | 195.05 | 501 / 502 |
intestine | 100% | 1687.09 | 966 / 966 | 100% | 118.00 | 525 / 527 |
uterus | 100% | 1079.36 | 170 / 170 | 99% | 112.36 | 456 / 459 |
bladder | 100% | 1438.43 | 21 / 21 | 99% | 127.07 | 499 / 504 |
stomach | 100% | 1365.99 | 359 / 359 | 99% | 109.03 | 283 / 286 |
skin | 100% | 1475.46 | 1809 / 1809 | 99% | 73.54 | 465 / 472 |
breast | 100% | 1501.62 | 459 / 459 | 98% | 100.58 | 1101 / 1118 |
lung | 100% | 1226.56 | 576 / 578 | 99% | 92.02 | 1139 / 1155 |
pancreas | 100% | 661.59 | 327 / 328 | 98% | 60.35 | 175 / 178 |
thymus | 100% | 1304.35 | 653 / 653 | 97% | 49.13 | 588 / 605 |
kidney | 100% | 1378.40 | 89 / 89 | 94% | 43.15 | 845 / 901 |
adrenal gland | 100% | 929.59 | 258 / 258 | 85% | 32.57 | 196 / 230 |
adipose | 100% | 1255.11 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 90.17 | 29 / 29 |
spleen | 100% | 1126.19 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 86.08 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 106.20 | 1 / 1 |
blood vessel | 100% | 1215.22 | 1334 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 54.48 | 79 / 80 |
heart | 98% | 645.76 | 840 / 861 | 0% | 0 | 0 / 0 |
muscle | 98% | 680.48 | 783 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 89% | 677.77 | 823 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0031398 | Biological process | positive regulation of protein ubiquitination |
GO_0031297 | Biological process | replication fork processing |
GO_0051301 | Biological process | cell division |
GO_0036297 | Biological process | interstrand cross-link repair |
GO_0007059 | Biological process | chromosome segregation |
GO_0000712 | Biological process | resolution of meiotic recombination intermediates |
GO_0051382 | Biological process | kinetochore assembly |
GO_0043240 | Cellular component | Fanconi anaemia nuclear complex |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0071821 | Cellular component | FANCM-MHF complex |
GO_0000939 | Cellular component | inner kinetochore |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CENPX |
Protein name | Centromere protein X (CENP-X) (FANCM-associated histone fold protein 2) (FANCM-interacting histone fold protein 2) (Fanconi anemia-associated polypeptide of 10 kDa) (Retinoic acid-inducible gene D9 protein homolog) (Stimulated by retinoic acid gene 13 protein homolog) Centromere protein X |
Synonyms | MHF2 STRA13 FAAP10 |
Description | FUNCTION: DNA-binding component of the Fanconi anemia (FA) core complex. Required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage . In complex with CENPS (MHF heterodimer), crucial cofactor for FANCM in both binding and ATP-dependent remodeling of DNA. Stabilizes FANCM. In complex with CENPS and FANCM (but not other FANC proteins), rapidly recruited to blocked forks and promotes gene conversion at blocked replication forks . In complex with CENPS, CENPT and CENPW (CENP-T-W-S-X heterotetramer), involved in the formation of a functional kinetochore outer plate, which is essential for kinetochore-microtubule attachment and faithful mitotic progression . As a component of MHF and CENP-T-W-S-X complexes, binds DNA and bends it to form a nucleosome-like structure . DNA-binding function is fulfilled in the presence of CENPS, with the following preference for DNA substates: Holliday junction > double-stranded > splay arm > single-stranded. Does not bind DNA on its own . . |
Accessions | ENST00000584600.5 ENST00000584347.1 ENST00000392359.8 [A8MT69-1] ENST00000580435.5 [A8MT69-3] J3QR01 ENST00000579520.5 A8MT69 J3QRS1 J3QR35 ENST00000306704.10 [A8MT69-2] |