Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 9 studies | 24% ± 5% | |
fibroblast | 6 studies | 25% ± 6% | |
regulatory T cell | 6 studies | 17% ± 1% | |
kidney loop of Henle epithelial cell | 5 studies | 21% ± 3% | |
connective tissue cell | 5 studies | 32% ± 3% | |
myofibroblast cell | 5 studies | 26% ± 7% | |
smooth muscle cell | 5 studies | 26% ± 5% | |
mesothelial cell | 4 studies | 31% ± 15% | |
endothelial cell | 4 studies | 20% ± 6% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 28% ± 11% | |
neuron | 3 studies | 54% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 20% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 2333.29 | 89 / 89 | 93% | 25.56 | 841 / 901 |
adrenal gland | 100% | 1650.50 | 257 / 258 | 84% | 45.67 | 194 / 230 |
breast | 100% | 1426.16 | 458 / 459 | 81% | 53.87 | 906 / 1118 |
uterus | 100% | 1295.92 | 170 / 170 | 78% | 28.71 | 356 / 459 |
esophagus | 100% | 2139.41 | 1444 / 1445 | 68% | 15.54 | 124 / 183 |
skin | 95% | 716.77 | 1712 / 1809 | 58% | 14.50 | 273 / 472 |
bladder | 100% | 701.52 | 21 / 21 | 49% | 13.19 | 247 / 504 |
lung | 99% | 987.79 | 574 / 578 | 45% | 11.35 | 515 / 1155 |
intestine | 98% | 1916.95 | 951 / 966 | 33% | 7.67 | 174 / 527 |
prostate | 99% | 920.38 | 242 / 245 | 17% | 2.25 | 87 / 502 |
ovary | 23% | 151.26 | 42 / 180 | 92% | 63.18 | 395 / 430 |
stomach | 79% | 884.13 | 282 / 359 | 36% | 5.92 | 104 / 286 |
thymus | 92% | 449.38 | 599 / 653 | 10% | 1.25 | 59 / 605 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.47 | 1 / 1 |
spleen | 100% | 1052.68 | 240 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 1235.78 | 1198 / 1204 | 0% | 0 | 0 / 0 |
pancreas | 14% | 47.19 | 45 / 328 | 85% | 22.53 | 151 / 178 |
blood vessel | 84% | 997.24 | 1128 / 1335 | 0% | 0 | 0 / 0 |
heart | 78% | 388.38 | 675 / 861 | 0% | 0 | 0 / 0 |
muscle | 58% | 202.91 | 462 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 42% | 220.74 | 389 / 929 | 0% | 0 | 0 / 0 |
liver | 23% | 75.30 | 53 / 226 | 3% | 0.54 | 12 / 406 |
lymph node | 0% | 0 | 0 / 0 | 24% | 2.91 | 7 / 29 |
brain | 7% | 76.51 | 174 / 2642 | 16% | 4.28 | 111 / 705 |
tonsil | 0% | 0 | 0 / 0 | 20% | 2.87 | 9 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048704 | Biological process | embryonic skeletal system morphogenesis |
GO_0007399 | Biological process | nervous system development |
GO_0021570 | Biological process | rhombomere 4 development |
GO_0021612 | Biological process | facial nerve structural organization |
GO_0002011 | Biological process | morphogenesis of an epithelial sheet |
GO_0021569 | Biological process | rhombomere 3 development |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0009953 | Biological process | dorsal/ventral pattern formation |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0048857 | Biological process | neural nucleus development |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
Gene name | HOXB2 |
Protein name | Homeobox protein Hox-B2 (Homeobox protein Hox-2.8) (Homeobox protein Hox-2H) (K8) |
Synonyms | HOX2H |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. . |
Accessions | ENST00000330070.6 P14652 |