Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 10 studies | 27% ± 12% | |
fibroblast | 9 studies | 20% ± 6% | |
adipocyte | 7 studies | 21% ± 3% | |
oligodendrocyte | 6 studies | 27% ± 10% | |
smooth muscle cell | 6 studies | 23% ± 5% | |
astrocyte | 5 studies | 30% ± 17% | |
endothelial cell of lymphatic vessel | 5 studies | 29% ± 5% | |
type I pneumocyte | 5 studies | 25% ± 7% | |
interneuron | 4 studies | 30% ± 12% | |
neuron | 4 studies | 38% ± 16% | |
oligodendrocyte precursor cell | 4 studies | 24% ± 6% | |
retinal rod cell | 4 studies | 18% ± 2% | |
GABAergic neuron | 4 studies | 34% ± 9% | |
glutamatergic neuron | 4 studies | 46% ± 7% | |
pericyte | 4 studies | 23% ± 5% | |
granule cell | 3 studies | 28% ± 5% | |
microglial cell | 3 studies | 21% ± 5% | |
cardiac muscle cell | 3 studies | 22% ± 1% | |
retina horizontal cell | 3 studies | 20% ± 4% | |
hepatocyte | 3 studies | 48% ± 12% | |
type II pneumocyte | 3 studies | 19% ± 5% | |
basal cell | 3 studies | 28% ± 10% | |
transit amplifying cell | 3 studies | 42% ± 27% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 771.15 | 1445 / 1445 | 100% | 5.41 | 183 / 183 |
lung | 100% | 947.15 | 578 / 578 | 100% | 4.49 | 1154 / 1155 |
intestine | 100% | 819.75 | 966 / 966 | 100% | 5.24 | 526 / 527 |
uterus | 100% | 862.65 | 170 / 170 | 100% | 7.10 | 458 / 459 |
breast | 100% | 648.44 | 459 / 459 | 100% | 5.32 | 1115 / 1118 |
stomach | 100% | 651.98 | 359 / 359 | 100% | 4.80 | 285 / 286 |
prostate | 100% | 924.96 | 245 / 245 | 99% | 4.08 | 499 / 502 |
pancreas | 100% | 604.63 | 328 / 328 | 99% | 3.53 | 176 / 178 |
ovary | 100% | 539.07 | 180 / 180 | 98% | 3.52 | 423 / 430 |
thymus | 100% | 821.50 | 653 / 653 | 98% | 3.13 | 593 / 605 |
kidney | 100% | 1086.39 | 89 / 89 | 98% | 6.62 | 883 / 901 |
skin | 100% | 851.77 | 1809 / 1809 | 98% | 4.07 | 461 / 472 |
bladder | 100% | 716.29 | 21 / 21 | 97% | 4.47 | 489 / 504 |
liver | 100% | 2735.54 | 226 / 226 | 93% | 3.88 | 377 / 406 |
brain | 90% | 646.17 | 2371 / 2642 | 96% | 3.40 | 675 / 705 |
adrenal gland | 100% | 410.03 | 258 / 258 | 84% | 1.89 | 194 / 230 |
lymph node | 0% | 0 | 0 / 0 | 100% | 3.88 | 29 / 29 |
spleen | 100% | 530.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 8.24 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.51 | 1 / 1 |
adipose | 100% | 584.54 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 541.16 | 1331 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 395.10 | 791 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 400.41 | 846 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 2.37 | 72 / 80 |
peripheral blood | 40% | 305.95 | 373 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006289 | Biological process | nucleotide-excision repair |
GO_0048854 | Biological process | brain morphogenesis |
GO_0002262 | Biological process | myeloid cell homeostasis |
GO_0034599 | Biological process | cellular response to oxidative stress |
GO_0006281 | Biological process | DNA repair |
GO_0019430 | Biological process | removal of superoxide radicals |
GO_0097150 | Biological process | neuronal stem cell population maintenance |
GO_0007281 | Biological process | germ cell development |
GO_0036297 | Biological process | interstrand cross-link repair |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0043240 | Cellular component | Fanconi anaemia nuclear complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | FANCC |
Protein name | FA complementation group C (Fanconi anemia complementation group C isoform 2) Fanconi anemia group C protein (Protein FACC) Fanconi anemia complementation group C isoform 1 FA complementation group C (cDNA FLJ61092, highly similar to Fanconi anemia group C protein) FA complementation group C |
Synonyms | FAC FACC |
Description | FUNCTION: DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May be implicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Upon IFNG induction, may facilitate STAT1 activation by recruiting STAT1 to IFNGR1. . FUNCTION: DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May be implicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Upon IFNG induction, may facilitate STAT1 activation by recruiting STAT1 to IFNGR1. . |
Accessions | ENST00000474949.1 Q00597 A0A024R9N2 ENST00000696262.1 ENST00000490972.7 B1ALR7 ENST00000433829.1 ENST00000649611.1 ENST00000649519.1 ENST00000375305.6 ENST00000647778.1 A0A8Q3WM43 A0A3B3ITN9 A0A3B3IU87 A0A3B3IS92 A0A087WW44 ENST00000647882.1 ENST00000649334.1 ENST00000289081.8 ENST00000649872.1 B4E3W2 A0A3B3IS26 A0A0S2Z3N5 |