Insufficient scRNA-seq data for expression of VRTN at single-cell level.
Insufficient scRNA-seq data for expression of VRTN at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 41% | 3.30 | 148 / 359 | 20% | 0.77 | 58 / 286 |
intestine | 46% | 5.58 | 449 / 966 | 12% | 0.32 | 61 / 527 |
spleen | 55% | 3.05 | 132 / 241 | 0% | 0 | 0 / 0 |
skin | 41% | 2.18 | 745 / 1809 | 0% | 0.01 | 2 / 472 |
pancreas | 33% | 1.09 | 107 / 328 | 3% | 0.09 | 5 / 178 |
ovary | 32% | 8.14 | 58 / 180 | 1% | 0.05 | 5 / 430 |
brain | 31% | 1.28 | 825 / 2642 | 0% | 0 | 0 / 705 |
esophagus | 15% | 0.48 | 215 / 1445 | 12% | 0.30 | 22 / 183 |
thymus | 23% | 1.24 | 150 / 653 | 0% | 0.00 | 1 / 605 |
breast | 20% | 0.84 | 92 / 459 | 3% | 0.17 | 28 / 1118 |
bladder | 19% | 0.67 | 4 / 21 | 3% | 0.08 | 13 / 504 |
blood vessel | 20% | 0.65 | 268 / 1335 | 0% | 0 | 0 / 0 |
lung | 16% | 0.48 | 93 / 578 | 4% | 0.11 | 41 / 1155 |
uterus | 17% | 0.54 | 29 / 170 | 2% | 0.16 | 9 / 459 |
adrenal gland | 17% | 0.60 | 44 / 258 | 0% | 0 | 0 / 230 |
prostate | 16% | 0.67 | 39 / 245 | 0% | 0 | 0 / 502 |
adipose | 14% | 0.46 | 171 / 1204 | 0% | 0 | 0 / 0 |
liver | 13% | 0.35 | 29 / 226 | 0% | 0.00 | 1 / 406 |
kidney | 12% | 0.33 | 11 / 89 | 0% | 0.00 | 1 / 901 |
muscle | 11% | 0.28 | 87 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 10% | 0.29 | 96 / 929 | 0% | 0 | 0 / 0 |
heart | 9% | 0.22 | 74 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.14 | 2 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
Gene name | VRTN |
Protein name | Vertebrae development associated Vertnin |
Synonyms | C14orf115 |
Description | FUNCTION: Acts as a transcription factor that regulates development of thoracic vertebrae. . |
Accessions | ENST00000557177.1 ENST00000256362.5 Q9H8Y1 G3V537 |