Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2183.89 | 459 / 459 | 100% | 25.10 | 1118 / 1118 |
esophagus | 100% | 2248.32 | 1445 / 1445 | 100% | 15.51 | 183 / 183 |
liver | 100% | 1434.70 | 226 / 226 | 100% | 15.73 | 406 / 406 |
ovary | 100% | 1692.62 | 180 / 180 | 100% | 16.27 | 430 / 430 |
stomach | 100% | 1891.72 | 359 / 359 | 100% | 18.43 | 286 / 286 |
uterus | 100% | 1930.63 | 170 / 170 | 100% | 20.40 | 459 / 459 |
intestine | 100% | 2278.71 | 966 / 966 | 100% | 20.00 | 526 / 527 |
bladder | 100% | 2116.48 | 21 / 21 | 100% | 20.56 | 503 / 504 |
prostate | 100% | 1810.95 | 245 / 245 | 100% | 17.97 | 501 / 502 |
kidney | 100% | 1876.21 | 89 / 89 | 100% | 13.73 | 899 / 901 |
brain | 100% | 2119.88 | 2635 / 2642 | 100% | 19.67 | 705 / 705 |
pancreas | 100% | 1336.59 | 327 / 328 | 100% | 15.46 | 178 / 178 |
thymus | 100% | 1821.07 | 653 / 653 | 100% | 14.91 | 603 / 605 |
lung | 100% | 1841.34 | 576 / 578 | 100% | 18.02 | 1155 / 1155 |
adrenal gland | 100% | 2558.81 | 258 / 258 | 100% | 16.62 | 229 / 230 |
skin | 100% | 2196.86 | 1808 / 1809 | 98% | 16.46 | 461 / 472 |
adipose | 100% | 2067.65 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.99 | 29 / 29 |
muscle | 100% | 5466.81 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1903.06 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.87 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.50 | 1 / 1 |
blood vessel | 100% | 2198.32 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 3412.03 | 849 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 16.41 | 74 / 80 |
peripheral blood | 85% | 1402.55 | 794 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1903894 | Biological process | regulation of IRE1-mediated unfolded protein response |
GO_0046328 | Biological process | regulation of JNK cascade |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0051091 | Biological process | positive regulation of DNA-binding transcription factor activity |
GO_0000338 | Biological process | protein deneddylation |
GO_0006412 | Biological process | translation |
GO_0006413 | Biological process | translational initiation |
GO_0043687 | Biological process | post-translational protein modification |
GO_2000434 | Biological process | regulation of protein neddylation |
GO_0045116 | Biological process | protein neddylation |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0006508 | Biological process | proteolysis |
GO_1990182 | Biological process | exosomal secretion |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0008180 | Cellular component | COP9 signalosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005852 | Cellular component | eukaryotic translation initiation factor 3 complex |
GO_0005634 | Cellular component | nucleus |
GO_0140492 | Molecular function | metal-dependent deubiquitinase activity |
GO_0019899 | Molecular function | enzyme binding |
GO_0008237 | Molecular function | metallopeptidase activity |
GO_0003743 | Molecular function | translation initiation factor activity |
GO_0035718 | Molecular function | macrophage migration inhibitory factor binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0019784 | Molecular function | deNEDDylase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | COPS5 |
Protein name | COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis), isoform CRA_a (Testis secretory sperm-binding protein Li 231m) COP9 signalosome complex subunit 5 (SGN5) (Signalosome subunit 5) (EC 3.4.-.-) (Jun activation domain-binding protein 1) COP9 signalosome subunit 5 |
Synonyms | hCG_27806 CSN5 JAB1 |
Description | FUNCTION: Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex. Interacts directly with a large number of proteins that are regulated by the CSN complex, confirming a key role in the complex. Promotes the proteasomal degradation of BRSK2. . |
Accessions | ENST00000518747.1 Q92905 ENST00000357849.9 E5RG35 ENST00000518374.5 E5RHF2 E5RK55 ENST00000517406.1 A0A024R7W9 ENST00000523890.5 ENST00000517736.5 E5RHH5 E5RFS1 |