Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 10 studies | 40% ± 18% | |
glutamatergic neuron | 7 studies | 38% ± 28% | |
oligodendrocyte precursor cell | 6 studies | 38% ± 26% | |
kidney loop of Henle epithelial cell | 5 studies | 41% ± 24% | |
cardiac muscle cell | 5 studies | 55% ± 10% | |
hepatocyte | 4 studies | 63% ± 27% | |
GABAergic neuron | 4 studies | 57% ± 21% | |
kidney distal convoluted tubule epithelial cell | 4 studies | 46% ± 17% | |
endothelial cell | 3 studies | 25% ± 1% | |
ependymal cell | 3 studies | 32% ± 13% | |
type I pneumocyte | 3 studies | 22% ± 4% | |
interneuron | 3 studies | 42% ± 9% | |
renal alpha-intercalated cell | 3 studies | 46% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 4440.65 | 89 / 89 | 92% | 22.66 | 830 / 901 |
liver | 99% | 4455.29 | 224 / 226 | 84% | 14.21 | 341 / 406 |
brain | 92% | 1223.06 | 2427 / 2642 | 89% | 7.10 | 626 / 705 |
thymus | 100% | 4282.41 | 653 / 653 | 66% | 7.21 | 400 / 605 |
intestine | 84% | 1196.10 | 807 / 966 | 61% | 3.60 | 320 / 527 |
stomach | 79% | 820.66 | 282 / 359 | 60% | 4.28 | 171 / 286 |
skin | 75% | 1656.20 | 1364 / 1809 | 57% | 6.67 | 269 / 472 |
pancreas | 74% | 494.94 | 242 / 328 | 52% | 2.54 | 92 / 178 |
esophagus | 67% | 1147.16 | 971 / 1445 | 55% | 4.33 | 100 / 183 |
adrenal gland | 82% | 629.69 | 212 / 258 | 38% | 2.18 | 88 / 230 |
lung | 87% | 880.61 | 505 / 578 | 31% | 2.00 | 363 / 1155 |
prostate | 81% | 718.09 | 198 / 245 | 23% | 0.82 | 116 / 502 |
muscle | 100% | 5044.34 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 96% | 6223.95 | 827 / 861 | 0% | 0 | 0 / 0 |
adipose | 72% | 580.44 | 870 / 1204 | 0% | 0 | 0 / 0 |
breast | 56% | 416.11 | 259 / 459 | 9% | 0.77 | 105 / 1118 |
bladder | 33% | 178.86 | 7 / 21 | 22% | 1.24 | 109 / 504 |
uterus | 29% | 200.71 | 49 / 170 | 24% | 2.10 | 108 / 459 |
blood vessel | 33% | 261.97 | 436 / 1335 | 0% | 0 | 0 / 0 |
ovary | 20% | 143.78 | 36 / 180 | 7% | 0.32 | 32 / 430 |
tonsil | 0% | 0 | 0 / 0 | 13% | 0.95 | 6 / 45 |
eye | 0% | 0 | 0 / 0 | 9% | 0.38 | 7 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.41 | 1 / 29 |
spleen | 3% | 20.10 | 7 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.45 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0097009 | Biological process | energy homeostasis |
GO_0050873 | Biological process | brown fat cell differentiation |
GO_0006397 | Biological process | mRNA processing |
GO_0051091 | Biological process | positive regulation of DNA-binding transcription factor activity |
GO_0019395 | Biological process | fatty acid oxidation |
GO_0007586 | Biological process | digestion |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0045333 | Biological process | cellular respiration |
GO_0046321 | Biological process | positive regulation of fatty acid oxidation |
GO_0002021 | Biological process | response to dietary excess |
GO_0001678 | Biological process | intracellular glucose homeostasis |
GO_0032922 | Biological process | circadian regulation of gene expression |
GO_0042752 | Biological process | regulation of circadian rhythm |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0042594 | Biological process | response to starvation |
GO_0014850 | Biological process | response to muscle activity |
GO_0051402 | Biological process | neuron apoptotic process |
GO_0045722 | Biological process | positive regulation of gluconeogenesis |
GO_0034599 | Biological process | cellular response to oxidative stress |
GO_0007005 | Biological process | mitochondrion organization |
GO_0008380 | Biological process | RNA splicing |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0050821 | Biological process | protein stabilization |
GO_0006094 | Biological process | gluconeogenesis |
GO_0022904 | Biological process | respiratory electron transport chain |
GO_0048662 | Biological process | negative regulation of smooth muscle cell proliferation |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0120162 | Biological process | positive regulation of cold-induced thermogenesis |
GO_0060612 | Biological process | adipose tissue development |
GO_0001659 | Biological process | temperature homeostasis |
GO_0006367 | Biological process | transcription initiation at RNA polymerase II promoter |
GO_0043524 | Biological process | negative regulation of neuron apoptotic process |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0016605 | Cellular component | PML body |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0008134 | Molecular function | transcription factor binding |
GO_0003677 | Molecular function | DNA binding |
GO_0016922 | Molecular function | nuclear receptor binding |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0003712 | Molecular function | transcription coregulator activity |
GO_0061629 | Molecular function | RNA polymerase II-specific DNA-binding transcription factor binding |
GO_0106222 | Molecular function | lncRNA binding |
GO_0003723 | Molecular function | RNA binding |
GO_0031490 | Molecular function | chromatin DNA binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0030374 | Molecular function | nuclear receptor coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | PPARGC1A |
Protein name | Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1-alpha) (PPAR-gamma coactivator 1-alpha) (PPARGC-1-alpha) (Ligand effect modulator 6) PPARG coactivator 1 alpha |
Synonyms | PGC1 LEM6 PPARGC1 PGC1A |
Description | FUNCTION: Transcriptional coactivator for steroid receptors and nuclear receptors . Greatly increases the transcriptional activity of PPARG and thyroid hormone receptor on the uncoupling protein promoter . Can regulate key mitochondrial genes that contribute to the program of adaptive thermogenesis . Plays an essential role in metabolic reprogramming in response to dietary availability through coordination of the expression of a wide array of genes involved in glucose and fatty acid metabolism . Acts as a key regulator of gluconeogenesis: stimulates hepatic gluconeogenesis by increasing the expression of gluconeogenic enzymes, and acting together with FOXO1 to promote the fasting gluconeogenic program . Induces the expression of PERM1 in the skeletal muscle in an ESRRA-dependent manner . Also involved in the integration of the circadian rhythms and energy metabolism (By similarity). Required for oscillatory expression of clock genes, such as BMAL1 and NR1D1, through the coactivation of RORA and RORC, and metabolic genes, such as PDK4 and PEPCK (By similarity). . |
Accessions | ENST00000617484.4 ENST00000507380.1 A0A087WVW3 ENST00000612355.1 ENST00000513205.5 [Q9UBK2-8] D6RBF3 A0A087WTJ3 ENST00000264867.7 [Q9UBK2-1] ENST00000613098.4 [Q9UBK2-9] Q9UBK2 ENST00000506055.5 [Q9UBK2-2] |