VSX1 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of VSX1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	431.15	2638 / 2642	27%	0.77	191 / 705
adrenal gland	28%	14.35	71 / 258	44%	2.27	102 / 230
ovary	60%	39.59	108 / 180	2%	0.06	10 / 430
muscle	60%	31.65	482 / 803	0%	0	0 / 0
bladder	57%	23.86	12 / 21	1%	0.03	7 / 504
pancreas	37%	12.78	120 / 328	4%	0.07	7 / 178
prostate	35%	13.08	85 / 245	1%	0.01	3 / 502
uterus	34%	29.36	58 / 170	0%	0.01	2 / 459
thymus	23%	7.91	151 / 653	6%	0.18	38 / 605
heart	27%	9.35	233 / 861	0%	0	0 / 0
liver	18%	8.02	40 / 226	8%	0.19	32 / 406
stomach	19%	7.26	70 / 359	2%	0.07	6 / 286
esophagus	18%	7.21	267 / 1445	3%	0.08	5 / 183
intestine	14%	4.55	138 / 966	2%	0.04	8 / 527
breast	9%	3.09	43 / 459	4%	0.08	44 / 1118
kidney	0%	0	0 / 89	9%	0.21	80 / 901
lung	0%	0	0 / 578	6%	0.13	75 / 1155
eye	0%	0	0 / 0	4%	0.26	3 / 80
skin	1%	0.22	13 / 1809	3%	0.07	12 / 472
blood vessel	1%	0.14	7 / 1335	0%	0	0 / 0
adipose	0%	0.02	1 / 1204	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007601	Biological process	visual perception
GO_0042551	Biological process	neuron maturation
GO_0060040	Biological process	retinal bipolar neuron differentiation
GO_0048666	Biological process	neuron development
GO_0006355	Biological process	regulation of DNA-templated transcription
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0005575	Cellular component	cellular_component
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0003700	Molecular function	DNA-binding transcription factor activity
GO_0005515	Molecular function	protein binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_0000976	Molecular function	transcription cis-regulatory region binding

Gene name	VSX1
Protein name	Visual system homeobox 1 (Homeodomain protein RINX) (Retinal inner nuclear layer homeobox protein) (Transcription factor VSX1) Visual system homeobox 1
Synonyms	RINX
Description	FUNCTION: Binds to the 37-bp core of the locus control region (LCR) of the red/green visual pigment gene cluster . May regulate the activity of the LCR and the cone opsin genes at earlier stages of development . Dispensable in early retinal development (By similarity). .
Accessions	Q9NZR4 ENST00000376707.4 [Q9NZR4-2] ENST00000429762.7 [Q9NZR4-8] ENST00000409285.6 [Q9NZR4-5] D3YHE7 ENST00000409958.6 [Q9NZR4-6] ENST00000444511.6 [Q9NZR4-7] ENST00000376709.9 [Q9NZR4-1]

VSX1 report