Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 16 studies | 27% ± 6% | |
peripheral blood | 16 studies | 30% ± 9% | |
intestine | 11 studies | 25% ± 9% | |
kidney | 6 studies | 31% ± 9% | |
brain | 5 studies | 23% ± 8% | |
eye | 5 studies | 35% ± 21% | |
lymph node | 5 studies | 30% ± 5% | |
uterus | 4 studies | 44% ± 12% | |
breast | 4 studies | 42% ± 13% | |
liver | 4 studies | 32% ± 11% | |
pancreas | 3 studies | 45% ± 8% | |
placenta | 3 studies | 18% ± 4% | |
bone marrow | 3 studies | 35% ± 14% | |
prostate | 3 studies | 24% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 14599.32 | 1445 / 1445 | 100% | 84.51 | 183 / 183 |
ovary | 100% | 18548.43 | 180 / 180 | 100% | 76.49 | 430 / 430 |
prostate | 100% | 17757.74 | 245 / 245 | 100% | 114.16 | 502 / 502 |
stomach | 100% | 13205.06 | 359 / 359 | 100% | 68.95 | 286 / 286 |
breast | 100% | 16304.84 | 459 / 459 | 100% | 108.14 | 1117 / 1118 |
intestine | 100% | 15910.58 | 966 / 966 | 100% | 75.57 | 526 / 527 |
bladder | 100% | 15917.71 | 21 / 21 | 100% | 79.79 | 503 / 504 |
skin | 100% | 15404.32 | 1809 / 1809 | 100% | 100.95 | 471 / 472 |
uterus | 100% | 19053.85 | 170 / 170 | 100% | 98.97 | 458 / 459 |
lung | 100% | 16818.99 | 578 / 578 | 100% | 86.27 | 1151 / 1155 |
brain | 100% | 11144.84 | 2632 / 2642 | 100% | 86.41 | 705 / 705 |
thymus | 100% | 23104.62 | 653 / 653 | 100% | 105.41 | 602 / 605 |
pancreas | 100% | 10893.11 | 328 / 328 | 99% | 73.04 | 177 / 178 |
kidney | 100% | 14749.89 | 89 / 89 | 98% | 63.47 | 887 / 901 |
liver | 100% | 9351.17 | 226 / 226 | 97% | 52.34 | 394 / 406 |
adrenal gland | 100% | 15001.96 | 258 / 258 | 97% | 76.38 | 223 / 230 |
adipose | 100% | 15898.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 15979.14 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 92.92 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 83.30 | 29 / 29 |
muscle | 100% | 9771.47 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 20889.43 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 95.50 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 65.07 | 1 / 1 |
heart | 99% | 7909.40 | 854 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 13107.42 | 913 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071168 | Biological process | protein localization to chromatin |
GO_2000330 | Biological process | positive regulation of T-helper 17 cell lineage commitment |
GO_0007283 | Biological process | spermatogenesis |
GO_0001843 | Biological process | neural tube closure |
GO_0140588 | Biological process | chromatin looping |
GO_0006334 | Biological process | nucleosome assembly |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0070577 | Molecular function | lysine-acetylated histone binding |
GO_0140033 | Molecular function | acetylation-dependent protein binding |
GO_0004674 | Molecular function | protein serine/threonine kinase activity |
GO_0005515 | Molecular function | protein binding |
GO_0003682 | Molecular function | chromatin binding |
Gene name | BRD2 |
Protein name | Bromodomain-containing protein 2 (O27.1.1) Bromodomain containing 2 (Bromodomain-containing protein 2) Bromodomain containing 2 Bromodomain-containing protein 2 |
Synonyms | KIAA9001 RING3 |
Description | FUNCTION: Chromatin reader protein that specifically recognizes and binds histone H4 acetylated at 'Lys-5' and 'Lys-12' (H4K5ac and H4K12ac, respectively), thereby controlling gene expression and remodeling chromatin structures . Recruits transcription factors and coactivators to target gene sites, and activates RNA polymerase II machinery for transcriptional elongation . Plays a key role in genome compartmentalization via its association with CTCF and cohesin: recruited to chromatin by CTCF and promotes formation of topologically associating domains (TADs) via its ability to bind acetylated histones, contributing to CTCF boundary formation and enhancer insulation . Also recognizes and binds acetylated non-histone proteins, such as STAT3 . Involved in inflammatory response by regulating differentiation of naive CD4(+) T-cells into T-helper Th17: recognizes and binds STAT3 acetylated at 'Lys-87', promoting STAT3 recruitment to chromatin . In addition to acetylated lysines, also recognizes and binds lysine residues on histones that are both methylated and acetylated on the same side chain to form N6-acetyl-N6-methyllysine (Kacme), an epigenetic mark of active chromatin associated with increased transcriptional initiation . Specifically binds histone H4 acetyl-methylated at 'Lys-5' and 'Lys-12' (H4K5acme and H4K12acme, respectively) . . |
Accessions | ENST00000452539.5 ENST00000429833.5 ENST00000456339.5 ENST00000481259.1 ENST00000414731.6 ENST00000446150.3 ENST00000450320.5 ENST00000607833.5 ENST00000454038.5 ENST00000425016.5 ENST00000549126.4 [P25440-1] H0Y799 ENST00000433783.5 ENST00000496118.2 A0A0G2JK44 ENST00000677085.1 ENST00000477259.5 A0A140T9X8 ENST00000678778.1 ENST00000442863.5 [P25440-2] X5CF57 ENST00000552587.4 [P25440-1] ENST00000449118.5 A0A0G2JHN8 H0Y6K2 ENST00000493063.5 ENST00000374831.8 [P25440-1] ENST00000383108.6 [P25440-1] ENST00000518754.1 ENST00000442219.5 ENST00000425201.5 ENST00000457933.1 J3QR72 ENST00000399527.5 [P25440-2] A0A140T9I1 ENST00000427021.3 ENST00000438194.6 [P25440-1] A0A140T9V2 E9PKQ9 ENST00000679179.1 E9PIQ3 ENST00000450284.5 ENST00000479699.5 A0A140T9F7 A0A140T9E9 ENST00000424160.5 H0YDJ7 U3KQA6 ENST00000412535.5 ENST00000395287.5 [P25440-2] ENST00000399529.7 [P25440-1] ENST00000495733.5 ENST00000439194.3 ENST00000436979.5 [P25440-3] ENST00000416727.5 ENST00000492172.5 ENST00000606059.1 U3KPW0 ENST00000448067.5 [P25440-2] A0A0G2JHL0 ENST00000496177.1 ENST00000449025.5 ENST00000486864.5 ENST00000374825.9 [P25440-1] ENST00000477920.5 ENST00000399528.5 [P25440-1] ENST00000449085.4 [P25440-1] ENST00000678250.1 [P25440-1] ENST00000482914.5 P25440 ENST00000447730.5 |