Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 23% ± 2% | |
epithelial cell | 4 studies | 21% ± 3% | |
GABAergic neuron | 3 studies | 25% ± 7% | |
astrocyte | 3 studies | 19% ± 3% | |
glutamatergic neuron | 3 studies | 29% ± 9% | |
oligodendrocyte precursor cell | 3 studies | 20% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 23% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3740.55 | 1445 / 1445 | 100% | 32.72 | 183 / 183 |
ovary | 100% | 4451.74 | 180 / 180 | 100% | 33.49 | 430 / 430 |
pancreas | 100% | 2458.24 | 328 / 328 | 100% | 27.51 | 178 / 178 |
prostate | 100% | 4666.05 | 245 / 245 | 100% | 26.38 | 502 / 502 |
skin | 100% | 4041.45 | 1809 / 1809 | 100% | 31.34 | 472 / 472 |
lung | 100% | 4457.69 | 578 / 578 | 100% | 27.11 | 1154 / 1155 |
breast | 100% | 3571.34 | 459 / 459 | 100% | 27.74 | 1117 / 1118 |
thymus | 100% | 4796.24 | 653 / 653 | 100% | 29.41 | 604 / 605 |
intestine | 100% | 3831.38 | 966 / 966 | 100% | 27.90 | 526 / 527 |
uterus | 100% | 4787.28 | 170 / 170 | 100% | 31.81 | 458 / 459 |
kidney | 100% | 3547.34 | 89 / 89 | 100% | 22.18 | 899 / 901 |
brain | 100% | 3078.52 | 2635 / 2642 | 100% | 27.51 | 705 / 705 |
stomach | 100% | 2890.42 | 359 / 359 | 100% | 27.72 | 285 / 286 |
bladder | 100% | 3858.67 | 21 / 21 | 100% | 30.95 | 502 / 504 |
adrenal gland | 100% | 3626.38 | 258 / 258 | 100% | 22.46 | 229 / 230 |
liver | 100% | 2091.95 | 226 / 226 | 99% | 19.49 | 403 / 406 |
adipose | 100% | 3383.54 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 30.48 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 24.09 | 29 / 29 |
spleen | 100% | 5561.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 25.13 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 46.72 | 1 / 1 |
blood vessel | 100% | 3359.26 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 2235.26 | 860 / 861 | 0% | 0 | 0 / 0 |
muscle | 99% | 1948.59 | 797 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 2869.53 | 910 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071168 | Biological process | protein localization to chromatin |
GO_0060914 | Biological process | heart formation |
GO_0035914 | Biological process | skeletal muscle cell differentiation |
GO_0022008 | Biological process | neurogenesis |
GO_0051898 | Biological process | negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction |
GO_0006998 | Biological process | nuclear envelope organization |
GO_0071763 | Biological process | nuclear membrane organization |
GO_0043409 | Biological process | negative regulation of MAPK cascade |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005637 | Cellular component | nuclear inner membrane |
GO_0000785 | Cellular component | chromatin |
GO_0031965 | Cellular component | nuclear membrane |
GO_0034399 | Cellular component | nuclear periphery |
GO_0005819 | Cellular component | spindle |
GO_0005635 | Cellular component | nuclear envelope |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | LEMD2 |
Protein name | LEMD2 LEM domain nuclear envelope protein 2 LEM domain-containing protein 2 (hLEM2) |
Synonyms | |
Description | FUNCTION: Nuclear lamina-associated inner nuclear membrane protein that is involved in nuclear structure organization, maintenance of nuclear envelope (NE) integrity and NE reformation after mitosis . Plays a role as transmembrane adapter for the endosomal sorting complexes required for transport (ESCRT), and is thereby involved in ESCRT-mediated NE reformation . Promotes ESCRT-mediated NE closure by recruiting CHMP7 and downstream ESCRT-III proteins IST1/CHMP8 and CHMP2A to the reforming NE during anaphase . During nuclear reassembly, condenses into a liquid-like coating around microtubule spindles and coassembles with CHMP7 to form a macromolecular O-ring seal at the confluence between membranes, chromatin, and the spindle to facilitate early nuclear sealing . Plays a role in the organization of heterochromatin associated with the NE and in the maintenance of NE organization under mechanical stress (By similarity). Required for embryonic development and involved in regulation of several signaling pathways such as MAPK and AKT (By similarity). Required for myoblast differentiation involving regulation of ERK signaling (By similarity). Essential for cardiac homeostasis and proper heart function (By similarity). . |
Accessions | D6R958 ENST00000508327.5 [Q8NC56-2] A0A220T1R7 H7C2Z0 ENST00000421671.6 ENST00000442696.6 ENST00000504692.1 H0Y9B7 D6RBV0 ENST00000293760.10 [Q8NC56-1] Q8NC56 ENST00000506578.5 H0Y8H8 ENST00000513701.1 |