Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 10 studies | 21% ± 6% | |
peripheral blood | 8 studies | 23% ± 7% | |
brain | 8 studies | 31% ± 9% | |
eye | 6 studies | 26% ± 10% | |
intestine | 5 studies | 26% ± 9% | |
liver | 4 studies | 31% ± 20% | |
pancreas | 3 studies | 44% ± 16% | |
bone marrow | 3 studies | 22% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3478.51 | 1445 / 1445 | 100% | 64.43 | 183 / 183 |
lung | 100% | 2862.44 | 578 / 578 | 100% | 43.04 | 1155 / 1155 |
breast | 100% | 3810.05 | 459 / 459 | 99% | 58.77 | 1109 / 1118 |
ovary | 100% | 4447.66 | 180 / 180 | 99% | 31.43 | 426 / 430 |
brain | 100% | 2283.84 | 2632 / 2642 | 99% | 49.48 | 699 / 705 |
pancreas | 99% | 2198.90 | 326 / 328 | 99% | 33.22 | 176 / 178 |
uterus | 100% | 4215.57 | 170 / 170 | 98% | 53.40 | 451 / 459 |
stomach | 100% | 2387.91 | 359 / 359 | 98% | 45.32 | 281 / 286 |
bladder | 100% | 3097.95 | 21 / 21 | 98% | 38.51 | 494 / 504 |
thymus | 100% | 3140.40 | 653 / 653 | 98% | 41.09 | 592 / 605 |
intestine | 100% | 3598.67 | 966 / 966 | 98% | 41.49 | 514 / 527 |
prostate | 100% | 2319.42 | 245 / 245 | 97% | 31.72 | 488 / 502 |
skin | 100% | 4440.48 | 1809 / 1809 | 94% | 45.11 | 444 / 472 |
adrenal gland | 100% | 2618.31 | 258 / 258 | 93% | 33.28 | 215 / 230 |
kidney | 99% | 1715.79 | 88 / 89 | 92% | 28.23 | 828 / 901 |
liver | 98% | 1182.28 | 222 / 226 | 85% | 20.61 | 345 / 406 |
blood vessel | 100% | 3608.02 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 47.23 | 29 / 29 |
spleen | 100% | 3487.10 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.52 | 1 / 1 |
adipose | 100% | 3689.75 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2435.98 | 801 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 58.16 | 44 / 45 |
heart | 95% | 1649.89 | 814 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 81% | 20.95 | 65 / 80 |
peripheral blood | 77% | 2620.02 | 715 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034089 | Biological process | establishment of meiotic sister chromatid cohesion |
GO_0007062 | Biological process | sister chromatid cohesion |
GO_0006281 | Biological process | DNA repair |
GO_0000278 | Biological process | mitotic cell cycle |
GO_0007064 | Biological process | mitotic sister chromatid cohesion |
GO_0051301 | Biological process | cell division |
GO_0034087 | Biological process | establishment of mitotic sister chromatid cohesion |
GO_0090307 | Biological process | mitotic spindle assembly |
GO_0051321 | Biological process | meiotic cell cycle |
GO_0019827 | Biological process | stem cell population maintenance |
GO_0006275 | Biological process | regulation of DNA replication |
GO_0000775 | Cellular component | chromosome, centromeric region |
GO_0097431 | Cellular component | mitotic spindle pole |
GO_0008278 | Cellular component | cohesin complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0016363 | Cellular component | nuclear matrix |
GO_0005829 | Cellular component | cytosol |
GO_0030892 | Cellular component | mitotic cohesin complex |
GO_0030893 | Cellular component | meiotic cohesin complex |
GO_0000800 | Cellular component | lateral element |
GO_0005694 | Cellular component | chromosome |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0048487 | Molecular function | beta-tubulin binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0003777 | Molecular function | microtubule motor activity |
GO_0005524 | Molecular function | ATP binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0070840 | Molecular function | dynein complex binding |
GO_0036033 | Molecular function | mediator complex binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | SMC3 |
Protein name | Structural maintenance of chromosomes protein 3 (SMC protein 3) (SMC-3) (Basement membrane-associated chondroitin proteoglycan) (Bamacan) (Chondroitin sulfate proteoglycan 6) (Chromosome-associated polypeptide) (hCAP) Structural maintenance of chromosomes protein |
Synonyms | SMC3L1 BAM BMH CSPG6 |
Description | FUNCTION: Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex also plays an important role in spindle pole assembly during mitosis and in chromosomes movement. . FUNCTION: Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex also plays an important role in spindle pole assembly during mitosis and in chromosomes movement. . |
Accessions | Q86VX4 Q9UQE7 ENST00000361804.5 |