H1-0 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	20 studies	29% ± 14%	Explore
smooth muscle cell	16 studies	31% ± 17%	Explore
endothelial cell	16 studies	26% ± 11%	Explore
pericyte	15 studies	34% ± 16%	Explore
epithelial cell	14 studies	39% ± 11%	Explore
basal cell	12 studies	32% ± 18%	Explore
connective tissue cell	11 studies	37% ± 16%	Explore
ciliated cell	10 studies	28% ± 11%	Explore
endothelial cell of lymphatic vessel	9 studies	25% ± 8%	Explore
macrophage	8 studies	23% ± 6%	Explore
secretory cell	8 studies	28% ± 12%	Explore
myofibroblast cell	8 studies	45% ± 15%	Explore
goblet cell	8 studies	37% ± 13%	Explore
club cell	7 studies	26% ± 7%	Explore
abnormal cell	7 studies	23% ± 7%	Explore
type II pneumocyte	6 studies	33% ± 14%	Explore
ionocyte	6 studies	39% ± 15%	Explore
respiratory goblet cell	6 studies	32% ± 10%	Explore
non-classical monocyte	6 studies	19% ± 3%	Explore
progenitor cell	6 studies	30% ± 17%	Explore
hematopoietic stem cell	6 studies	43% ± 20%	Explore
erythrocyte	6 studies	43% ± 10%	Explore
monocyte	5 studies	23% ± 10%	Explore
kidney loop of Henle epithelial cell	5 studies	25% ± 8%	Explore
neuron	5 studies	56% ± 28%	Explore
enteroendocrine cell	5 studies	35% ± 13%	Explore
brush cell	5 studies	31% ± 9%	Explore
squamous epithelial cell	4 studies	57% ± 9%	Explore
classical monocyte	4 studies	19% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	44% ± 17%	Explore
erythroblast	4 studies	45% ± 29%	Explore
mesothelial cell	4 studies	37% ± 6%	Explore
myeloid cell	4 studies	22% ± 5%	Explore
enterocyte	4 studies	21% ± 3%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	41% ± 14%	Explore
transit amplifying cell	4 studies	19% ± 3%	Explore
type I pneumocyte	3 studies	36% ± 14%	Explore
hematopoietic precursor cell	3 studies	42% ± 11%	Explore
duct epithelial cell	3 studies	26% ± 12%	Explore
precursor cell	3 studies	45% ± 24%	Explore
renal alpha-intercalated cell	3 studies	34% ± 13%	Explore
neural crest cell	3 studies	56% ± 19%	Explore
vein endothelial cell	3 studies	35% ± 11%	Explore
pro-B cell	3 studies	23% ± 6%	Explore
retina horizontal cell	3 studies	31% ± 8%	Explore
serous secreting cell	3 studies	22% ± 4%	Explore
Mueller cell	3 studies	20% ± 3%	Explore
GABAergic neuron	3 studies	19% ± 2%	Explore
glutamatergic neuron	3 studies	24% ± 6%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	57% ± 12%	Explore
intestinal crypt stem cell	3 studies	23% ± 2%	Explore
conventional dendritic cell	3 studies	21% ± 3%	Explore
interneuron	3 studies	30% ± 9%	Explore
luminal cell of prostate epithelium	3 studies	25% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	7 studies	35% ± 14%	Explore
intestine	7 studies	30% ± 13%	Explore
brain	4 studies	21% ± 8%	Explore
pancreas	3 studies	34% ± 15%	Explore
kidney	3 studies	26% ± 10%	Explore
liver	3 studies	34% ± 21%	Explore
bone marrow	3 studies	18% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	14081.46	245 / 245	100%	756.55	502 / 502
pancreas	100%	7578.04	327 / 328	99%	445.27	177 / 178
breast	100%	14746.34	457 / 459	99%	604.92	1104 / 1118
liver	100%	10407.85	226 / 226	98%	461.54	399 / 406
brain	98%	7260.75	2593 / 2642	99%	425.48	698 / 705
thymus	100%	11424.89	653 / 653	97%	283.17	585 / 605
esophagus	100%	15465.66	1439 / 1445	96%	293.47	176 / 183
lung	97%	8521.72	562 / 578	98%	470.33	1135 / 1155
ovary	99%	13305.11	178 / 180	97%	344.76	415 / 430
intestine	100%	14998.56	963 / 966	95%	370.70	503 / 527
uterus	99%	14408.25	169 / 170	95%	512.91	438 / 459
skin	100%	19900.71	1802 / 1809	95%	378.88	449 / 472
bladder	95%	9516.71	20 / 21	97%	406.86	488 / 504
stomach	100%	11478.70	359 / 359	92%	340.15	262 / 286
kidney	100%	8601.35	89 / 89	80%	184.51	724 / 901
adrenal gland	96%	5736.97	248 / 258	83%	213.84	190 / 230
ureter	0%	0	0 / 0	100%	223.59	1 / 1
adipose	99%	8882.84	1195 / 1204	0%	0	0 / 0
muscle	99%	12677.19	793 / 803	0%	0	0 / 0
blood vessel	97%	8558.07	1300 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	96%	203.08	77 / 80
heart	91%	5783.39	780 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	89%	402.88	40 / 45
spleen	82%	3778.87	197 / 241	0%	0	0 / 0
peripheral blood	40%	2342.44	368 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	21%	47.41	6 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0