Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 12 studies | 31% ± 9% | |
ciliated cell | 11 studies | 25% ± 9% | |
endothelial cell | 10 studies | 26% ± 12% | |
astrocyte | 7 studies | 28% ± 10% | |
glutamatergic neuron | 6 studies | 43% ± 23% | |
interneuron | 6 studies | 37% ± 22% | |
microglial cell | 6 studies | 22% ± 4% | |
retinal rod cell | 6 studies | 25% ± 6% | |
fibroblast | 6 studies | 25% ± 14% | |
GABAergic neuron | 6 studies | 40% ± 19% | |
amacrine cell | 5 studies | 36% ± 10% | |
retina horizontal cell | 5 studies | 37% ± 11% | |
adipocyte | 5 studies | 27% ± 6% | |
macrophage | 5 studies | 21% ± 7% | |
neuron | 4 studies | 30% ± 10% | |
retinal bipolar neuron | 4 studies | 24% ± 9% | |
epithelial cell | 4 studies | 35% ± 13% | |
retinal cone cell | 4 studies | 32% ± 6% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 7% | |
GABAergic interneuron | 3 studies | 20% ± 3% | |
retinal ganglion cell | 3 studies | 39% ± 5% | |
cardiac muscle cell | 3 studies | 19% ± 2% | |
Mueller cell | 3 studies | 28% ± 8% | |
rod bipolar cell | 3 studies | 33% ± 9% | |
basal cell | 3 studies | 31% ± 19% | |
ependymal cell | 3 studies | 30% ± 10% | |
endothelial cell of lymphatic vessel | 3 studies | 22% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1521.72 | 245 / 245 | 100% | 5.25 | 501 / 502 |
thymus | 100% | 2181.13 | 653 / 653 | 100% | 6.80 | 602 / 605 |
brain | 100% | 1404.14 | 2633 / 2642 | 100% | 7.19 | 703 / 705 |
breast | 100% | 2136.29 | 458 / 459 | 99% | 5.85 | 1106 / 1118 |
ovary | 100% | 2632.89 | 180 / 180 | 98% | 3.94 | 423 / 430 |
lung | 100% | 1471.47 | 576 / 578 | 99% | 4.16 | 1140 / 1155 |
esophagus | 99% | 1450.41 | 1437 / 1445 | 98% | 5.01 | 180 / 183 |
adrenal gland | 98% | 1361.72 | 253 / 258 | 98% | 5.16 | 226 / 230 |
kidney | 97% | 852.01 | 86 / 89 | 98% | 5.01 | 886 / 901 |
pancreas | 97% | 760.93 | 318 / 328 | 98% | 3.68 | 174 / 178 |
stomach | 99% | 1057.78 | 356 / 359 | 94% | 3.24 | 270 / 286 |
uterus | 100% | 2092.90 | 170 / 170 | 92% | 2.71 | 422 / 459 |
bladder | 100% | 1746.05 | 21 / 21 | 91% | 2.68 | 457 / 504 |
intestine | 100% | 1572.80 | 966 / 966 | 90% | 2.70 | 474 / 527 |
skin | 97% | 1969.48 | 1751 / 1809 | 93% | 3.90 | 438 / 472 |
liver | 84% | 471.24 | 189 / 226 | 68% | 1.48 | 278 / 406 |
spleen | 100% | 1623.16 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.38 | 1 / 1 |
muscle | 100% | 1713.14 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1519.85 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1944.14 | 1200 / 1204 | 0% | 0 | 0 / 0 |
heart | 97% | 1133.66 | 834 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 3.02 | 43 / 45 |
lymph node | 0% | 0 | 0 / 0 | 90% | 2.35 | 26 / 29 |
eye | 0% | 0 | 0 / 0 | 73% | 2.19 | 58 / 80 |
peripheral blood | 64% | 540.89 | 594 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0008150 | Biological process | biological_process |
GO_0005575 | Cellular component | cellular_component |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0046872 | Molecular function | metal ion binding |
GO_0003674 | Molecular function | molecular_function |
GO_0003723 | Molecular function | RNA binding |
Gene name | ZC3H6 |
Protein name | Zinc finger CCCH domain-containing protein 6 |
Synonyms | ZC3HDC6 KIAA2035 |
Description | |
Accessions | P61129 ENST00000409871.6 |