Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 28 studies | 34% ± 13% | |
macrophage | 25 studies | 31% ± 16% | |
conventional dendritic cell | 24 studies | 40% ± 18% | |
fibroblast | 22 studies | 31% ± 17% | |
dendritic cell | 21 studies | 47% ± 23% | |
classical monocyte | 21 studies | 34% ± 18% | |
ciliated cell | 16 studies | 45% ± 13% | |
monocyte | 15 studies | 29% ± 10% | |
memory B cell | 15 studies | 29% ± 9% | |
neutrophil | 15 studies | 56% ± 15% | |
microglial cell | 15 studies | 30% ± 11% | |
glutamatergic neuron | 13 studies | 75% ± 21% | |
oligodendrocyte precursor cell | 13 studies | 41% ± 16% | |
endothelial cell | 12 studies | 29% ± 18% | |
naive B cell | 11 studies | 26% ± 9% | |
GABAergic neuron | 11 studies | 55% ± 23% | |
non-classical monocyte | 10 studies | 30% ± 9% | |
neuron | 10 studies | 61% ± 24% | |
connective tissue cell | 9 studies | 39% ± 18% | |
myeloid cell | 9 studies | 45% ± 19% | |
pericyte | 8 studies | 34% ± 19% | |
astrocyte | 8 studies | 35% ± 14% | |
amacrine cell | 7 studies | 53% ± 22% | |
interneuron | 7 studies | 64% ± 17% | |
retinal ganglion cell | 7 studies | 80% ± 23% | |
mononuclear phagocyte | 6 studies | 36% ± 11% | |
mesothelial cell | 6 studies | 34% ± 11% | |
smooth muscle cell | 6 studies | 30% ± 11% | |
epithelial cell | 6 studies | 42% ± 27% | |
retina horizontal cell | 6 studies | 57% ± 16% | |
Mueller cell | 6 studies | 48% ± 21% | |
hematopoietic precursor cell | 5 studies | 26% ± 12% | |
mast cell | 5 studies | 22% ± 6% | |
retinal pigment epithelial cell | 5 studies | 44% ± 16% | |
leukocyte | 5 studies | 37% ± 10% | |
deuterosomal cell | 4 studies | 16% ± 1% | |
plasmablast | 4 studies | 26% ± 4% | |
progenitor cell | 4 studies | 30% ± 14% | |
myofibroblast cell | 4 studies | 30% ± 13% | |
granule cell | 4 studies | 48% ± 11% | |
GABAergic amacrine cell | 4 studies | 62% ± 6% | |
glycinergic amacrine cell | 4 studies | 36% ± 9% | |
plasma cell | 4 studies | 32% ± 11% | |
germinal center B cell | 4 studies | 50% ± 12% | |
luminal cell of prostate epithelium | 4 studies | 35% ± 5% | |
monocyte-derived dendritic cell | 4 studies | 57% ± 17% | |
basal cell | 4 studies | 31% ± 15% | |
abnormal cell | 3 studies | 34% ± 7% | |
GABAergic interneuron | 3 studies | 52% ± 13% | |
extravillous trophoblast | 3 studies | 79% ± 11% | |
placental villous trophoblast | 3 studies | 67% ± 25% | |
immature B cell | 3 studies | 24% ± 2% | |
intermediate monocyte | 3 studies | 30% ± 11% | |
OFF-bipolar cell | 3 studies | 52% ± 34% | |
neural progenitor cell | 3 studies | 47% ± 18% | |
oligodendrocyte | 3 studies | 33% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 93% | 14179.18 | 2448 / 2642 | 97% | 222.83 | 683 / 705 |
prostate | 89% | 7438.44 | 217 / 245 | 98% | 262.05 | 494 / 502 |
lung | 86% | 3107.74 | 496 / 578 | 85% | 131.07 | 976 / 1155 |
bladder | 95% | 4400.86 | 20 / 21 | 69% | 128.43 | 346 / 504 |
uterus | 71% | 2982.31 | 120 / 170 | 75% | 138.84 | 342 / 459 |
ovary | 79% | 2973.11 | 143 / 180 | 61% | 47.57 | 262 / 430 |
breast | 25% | 685.86 | 115 / 459 | 85% | 71.43 | 946 / 1118 |
thymus | 15% | 331.40 | 95 / 653 | 92% | 128.39 | 554 / 605 |
skin | 60% | 5728.06 | 1088 / 1809 | 44% | 27.67 | 207 / 472 |
lymph node | 0% | 0 | 0 / 0 | 100% | 432.46 | 29 / 29 |
peripheral blood | 100% | 32264.36 | 926 / 929 | 0% | 0 | 0 / 0 |
spleen | 98% | 6794.81 | 237 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 90% | 3449.65 | 1195 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 92.70 | 38 / 45 |
pancreas | 0% | 8.79 | 1 / 328 | 80% | 76.99 | 143 / 178 |
adrenal gland | 2% | 41.23 | 5 / 258 | 60% | 63.11 | 139 / 230 |
esophagus | 4% | 79.39 | 52 / 1445 | 57% | 67.80 | 105 / 183 |
adipose | 60% | 2318.13 | 726 / 1204 | 0% | 0 | 0 / 0 |
stomach | 9% | 208.47 | 33 / 359 | 50% | 31.31 | 143 / 286 |
intestine | 21% | 596.96 | 201 / 966 | 37% | 24.52 | 195 / 527 |
kidney | 21% | 508.39 | 19 / 89 | 30% | 20.14 | 274 / 901 |
liver | 1% | 45.62 | 3 / 226 | 10% | 10.56 | 42 / 406 |
eye | 0% | 0 | 0 / 0 | 9% | 4.35 | 7 / 80 |
heart | 6% | 145.34 | 55 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051260 | Biological process | protein homooligomerization |
GO_0060231 | Biological process | mesenchymal to epithelial transition |
GO_0008406 | Biological process | gonad development |
GO_0072112 | Biological process | podocyte differentiation |
GO_0007356 | Biological process | thorax and anterior abdomen determination |
GO_2001076 | Biological process | positive regulation of metanephric ureteric bud development |
GO_0060539 | Biological process | diaphragm development |
GO_0097435 | Biological process | supramolecular fiber organization |
GO_0060421 | Biological process | positive regulation of heart growth |
GO_0072075 | Biological process | metanephric mesenchyme development |
GO_0021762 | Biological process | substantia nigra development |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005886 | Cellular component | plasma membrane |
GO_0016607 | Cellular component | nuclear speck |
GO_0070062 | Cellular component | extracellular exosome |
GO_0016363 | Cellular component | nuclear matrix |
GO_0008180 | Cellular component | COP9 signalosome |
GO_0030426 | Cellular component | growth cone |
GO_0016605 | Cellular component | PML body |
GO_0005737 | Cellular component | cytoplasm |
GO_0030054 | Cellular component | cell junction |
GO_0000785 | Cellular component | chromatin |
GO_0031982 | Cellular component | vesicle |
GO_0005634 | Cellular component | nucleus |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | BASP1 |
Protein name | Brain acid soluble protein 1 (22 kDa neuronal tissue-enriched acidic protein) (Neuronal axonal membrane protein NAP-22) Brain abundant membrane attached signal protein 1 |
Synonyms | NAP22 |
Description | |
Accessions | ENST00000322611.4 [P80723-1] ENST00000616743.1 [P80723-1] ENST00000606445.1 U3KQP0 P80723 |