Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 3 studies | 25% ± 8% | |
epithelial cell | 3 studies | 20% ± 2% |
Insufficient scRNA-seq data for expression of CENPS at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
uterus | 100% | 348.40 | 170 / 170 | 98% | 4.06 | 452 / 459 |
prostate | 100% | 527.20 | 245 / 245 | 98% | 2.56 | 492 / 502 |
thymus | 100% | 696.69 | 653 / 653 | 97% | 3.22 | 585 / 605 |
ovary | 99% | 312.24 | 179 / 180 | 97% | 3.11 | 416 / 430 |
esophagus | 100% | 378.25 | 1445 / 1445 | 95% | 3.44 | 174 / 183 |
breast | 100% | 301.91 | 458 / 459 | 94% | 2.71 | 1052 / 1118 |
bladder | 100% | 433.48 | 21 / 21 | 93% | 2.91 | 471 / 504 |
intestine | 100% | 402.77 | 966 / 966 | 91% | 2.51 | 481 / 527 |
pancreas | 100% | 323.30 | 328 / 328 | 91% | 1.97 | 162 / 178 |
stomach | 100% | 376.07 | 359 / 359 | 90% | 2.67 | 258 / 286 |
lung | 97% | 348.16 | 560 / 578 | 93% | 2.45 | 1074 / 1155 |
kidney | 100% | 1030.24 | 89 / 89 | 89% | 2.93 | 798 / 901 |
adrenal gland | 100% | 675.08 | 258 / 258 | 81% | 1.70 | 186 / 230 |
skin | 94% | 353.01 | 1692 / 1809 | 77% | 1.58 | 362 / 472 |
liver | 99% | 259.50 | 223 / 226 | 61% | 1.23 | 248 / 406 |
brain | 100% | 429.99 | 2633 / 2642 | 58% | 1.30 | 407 / 705 |
spleen | 100% | 252.41 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.00 | 1 / 1 |
adipose | 99% | 268.43 | 1193 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 98% | 250.66 | 1312 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 3.44 | 43 / 45 |
heart | 91% | 191.81 | 780 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 2.90 | 26 / 29 |
muscle | 84% | 156.05 | 675 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 31% | 0.41 | 25 / 80 |
peripheral blood | 24% | 135.81 | 227 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006281 | Biological process | DNA repair |
GO_0036297 | Biological process | interstrand cross-link repair |
GO_0007059 | Biological process | chromosome segregation |
GO_0006974 | Biological process | DNA damage response |
GO_0051301 | Biological process | cell division |
GO_0031297 | Biological process | replication fork processing |
GO_0000712 | Biological process | resolution of meiotic recombination intermediates |
GO_0031398 | Biological process | positive regulation of protein ubiquitination |
GO_0000939 | Cellular component | inner kinetochore |
GO_0005654 | Cellular component | nucleoplasm |
GO_0043240 | Cellular component | Fanconi anaemia nuclear complex |
GO_0005829 | Cellular component | cytosol |
GO_0071821 | Cellular component | FANCM-MHF complex |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0005515 | Molecular function | protein binding |
Gene name | CENPS |
Protein name | Centromere protein S (CENP-S) (Apoptosis-inducing TAF9-like domain-containing protein 1) (FANCM-associated histone fold protein 1) (FANCM-interacting histone fold protein 1) (Fanconi anemia-associated polypeptide of 16 kDa) Centromere protein S CENPS-CORT readthrough (Centromere protein S) |
Synonyms | CENPS-CORT APITD1 MHF1 FAAP16 |
Description | FUNCTION: DNA-binding component of the Fanconi anemia (FA) core complex. Required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage . In complex with CENPX (MHF heterodimer), crucial cofactor for FANCM in both binding and ATP-dependent remodeling of DNA. Stabilizes FANCM . In complex with CENPX and FANCM (but not other FANC proteins), rapidly recruited to blocked forks and promotes gene conversion at blocked replication forks . In complex with CENPT, CENPW and CENPX (CENP-T-W-S-X heterotetramer), involved in the formation of a functional kinetochore outer plate, which is essential for kinetochore-microtubule attachment and faithful mitotic progression . As a component of MHF and CENP-T-W-S-X complexes, binds DNA and bends it to form a nucleosome-like structure . DNA-binding function is fulfilled in the presence of CENPX, with the following preference for DNA substates: Holliday junction > double-stranded > splay arm > single-stranded. Does not bind DNA on its own . . |
Accessions | ENST00000309048.8 [Q8N2Z9-1] ENST00000465026.1 ENST00000462462.1 Q8N2Z9 A0A0U1RQL5 K7ESB0 ENST00000477755.1 |