Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 16 studies | 42% ± 17% | |
oligodendrocyte precursor cell | 14 studies | 35% ± 17% | |
dendritic cell | 12 studies | 28% ± 9% | |
endothelial cell | 9 studies | 23% ± 7% | |
astrocyte | 9 studies | 28% ± 10% | |
conventional dendritic cell | 8 studies | 27% ± 12% | |
microglial cell | 8 studies | 23% ± 8% | |
adipocyte | 8 studies | 25% ± 6% | |
macrophage | 8 studies | 28% ± 9% | |
non-classical monocyte | 6 studies | 23% ± 7% | |
plasmacytoid dendritic cell | 6 studies | 22% ± 4% | |
myeloid cell | 6 studies | 24% ± 3% | |
regulatory T cell | 6 studies | 16% ± 1% | |
monocyte | 6 studies | 24% ± 8% | |
natural killer cell | 6 studies | 17% ± 2% | |
CD4-positive, alpha-beta T cell | 5 studies | 18% ± 1% | |
classical monocyte | 5 studies | 26% ± 4% | |
glutamatergic neuron | 4 studies | 32% ± 8% | |
interneuron | 4 studies | 25% ± 9% | |
CD16-positive, CD56-dim natural killer cell, human | 4 studies | 17% ± 1% | |
mast cell | 4 studies | 22% ± 5% | |
T follicular helper cell | 4 studies | 17% ± 2% | |
mononuclear phagocyte | 3 studies | 28% ± 9% | |
glycinergic amacrine cell | 3 studies | 21% ± 2% | |
B cell | 3 studies | 17% ± 1% | |
GABAergic neuron | 3 studies | 29% ± 1% | |
alveolar macrophage | 3 studies | 29% ± 8% | |
endothelial cell of lymphatic vessel | 3 studies | 18% ± 2% | |
pericyte | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 1515.69 | 577 / 578 | 100% | 18.35 | 1154 / 1155 |
brain | 100% | 1479.00 | 2635 / 2642 | 100% | 24.48 | 705 / 705 |
esophagus | 100% | 869.04 | 1441 / 1445 | 100% | 27.33 | 183 / 183 |
intestine | 100% | 1000.77 | 964 / 966 | 98% | 16.17 | 515 / 527 |
uterus | 100% | 1082.60 | 170 / 170 | 97% | 11.95 | 444 / 459 |
stomach | 98% | 662.45 | 353 / 359 | 98% | 18.41 | 281 / 286 |
bladder | 100% | 1235.14 | 21 / 21 | 96% | 13.33 | 485 / 504 |
thymus | 100% | 1076.60 | 652 / 653 | 96% | 9.02 | 582 / 605 |
breast | 100% | 1463.47 | 459 / 459 | 96% | 10.96 | 1071 / 1118 |
ovary | 96% | 622.48 | 172 / 180 | 99% | 10.98 | 427 / 430 |
pancreas | 97% | 546.17 | 317 / 328 | 98% | 12.53 | 174 / 178 |
prostate | 100% | 782.41 | 244 / 245 | 94% | 10.27 | 472 / 502 |
skin | 99% | 959.76 | 1790 / 1809 | 94% | 23.73 | 445 / 472 |
liver | 99% | 1013.27 | 224 / 226 | 94% | 12.24 | 381 / 406 |
kidney | 98% | 635.67 | 87 / 89 | 92% | 12.78 | 828 / 901 |
adrenal gland | 99% | 732.78 | 255 / 258 | 89% | 7.98 | 204 / 230 |
blood vessel | 100% | 1367.10 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1894.41 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.99 | 1 / 1 |
adipose | 100% | 2106.25 | 1203 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 16.48 | 28 / 29 |
muscle | 97% | 612.06 | 775 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 14.47 | 43 / 45 |
peripheral blood | 94% | 2056.15 | 872 / 929 | 0% | 0 | 0 / 0 |
heart | 94% | 562.97 | 807 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 56% | 4.23 | 45 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0035914 | Biological process | skeletal muscle cell differentiation |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000987 | Molecular function | cis-regulatory region sequence-specific DNA binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | FOXN2 |
Protein name | FOXN2 protein Forkhead box protein N2 (Human T-cell leukemia virus enhancer factor) Forkhead box N2 |
Synonyms | HTLF |
Description | FUNCTION: Binds to the purine-rich region in HTLV-I LTR. |
Accessions | Q6IS90 C9JTA7 ENST00000413569.5 P32314 ENST00000340553.8 [P32314-1] |