Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 24 studies | 34% ± 14% | |
astrocyte | 19 studies | 44% ± 19% | |
fibroblast | 19 studies | 26% ± 11% | |
pericyte | 18 studies | 25% ± 12% | |
oligodendrocyte | 15 studies | 52% ± 17% | |
oligodendrocyte precursor cell | 14 studies | 42% ± 18% | |
microglial cell | 13 studies | 36% ± 11% | |
glutamatergic neuron | 12 studies | 50% ± 26% | |
macrophage | 12 studies | 31% ± 13% | |
GABAergic neuron | 11 studies | 46% ± 23% | |
type I pneumocyte | 10 studies | 30% ± 11% | |
adipocyte | 10 studies | 32% ± 9% | |
smooth muscle cell | 10 studies | 31% ± 12% | |
neuron | 9 studies | 39% ± 20% | |
epithelial cell | 9 studies | 34% ± 16% | |
amacrine cell | 8 studies | 28% ± 7% | |
ciliated cell | 8 studies | 27% ± 10% | |
myeloid cell | 7 studies | 25% ± 4% | |
endothelial cell of lymphatic vessel | 7 studies | 31% ± 11% | |
type II pneumocyte | 7 studies | 23% ± 7% | |
mast cell | 7 studies | 22% ± 6% | |
capillary endothelial cell | 6 studies | 20% ± 4% | |
abnormal cell | 6 studies | 27% ± 13% | |
interneuron | 6 studies | 53% ± 20% | |
retinal ganglion cell | 6 studies | 42% ± 17% | |
myofibroblast cell | 6 studies | 26% ± 12% | |
B cell | 6 studies | 23% ± 6% | |
retina horizontal cell | 6 studies | 30% ± 6% | |
retinal cone cell | 6 studies | 27% ± 8% | |
dendritic cell | 6 studies | 29% ± 9% | |
retinal bipolar neuron | 5 studies | 28% ± 7% | |
naive B cell | 5 studies | 19% ± 2% | |
cardiac muscle cell | 5 studies | 27% ± 5% | |
mesothelial cell | 5 studies | 32% ± 13% | |
Mueller cell | 5 studies | 37% ± 14% | |
basal cell | 5 studies | 32% ± 17% | |
natural killer cell | 5 studies | 18% ± 1% | |
connective tissue cell | 5 studies | 20% ± 4% | |
monocyte | 5 studies | 24% ± 6% | |
club cell | 5 studies | 28% ± 9% | |
granule cell | 4 studies | 39% ± 8% | |
progenitor cell | 4 studies | 28% ± 5% | |
retinal pigment epithelial cell | 4 studies | 43% ± 21% | |
vein endothelial cell | 4 studies | 27% ± 16% | |
lymphocyte | 4 studies | 25% ± 7% | |
OFF-bipolar cell | 4 studies | 27% ± 7% | |
ON-bipolar cell | 4 studies | 29% ± 7% | |
retinal rod cell | 4 studies | 29% ± 6% | |
endothelial cell of vascular tree | 4 studies | 26% ± 14% | |
T cell | 4 studies | 24% ± 4% | |
goblet cell | 4 studies | 32% ± 19% | |
classical monocyte | 3 studies | 21% ± 4% | |
hematopoietic precursor cell | 3 studies | 24% ± 5% | |
GABAergic interneuron | 3 studies | 36% ± 5% | |
glial cell | 3 studies | 31% ± 5% | |
precursor B cell | 3 studies | 21% ± 1% | |
plasma cell | 3 studies | 30% ± 6% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 3% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 17% ± 1% | |
mononuclear phagocyte | 3 studies | 22% ± 2% | |
GABAergic amacrine cell | 3 studies | 28% ± 4% | |
glycinergic amacrine cell | 3 studies | 28% ± 2% | |
rod bipolar cell | 3 studies | 37% ± 11% | |
hepatocyte | 3 studies | 46% ± 13% | |
neural progenitor cell | 3 studies | 36% ± 14% | |
ependymal cell | 3 studies | 47% ± 16% | |
enteroendocrine cell | 3 studies | 25% ± 7% | |
leukocyte | 3 studies | 27% ± 10% | |
alveolar macrophage | 3 studies | 29% ± 8% | |
respiratory goblet cell | 3 studies | 32% ± 14% | |
Schwann cell | 3 studies | 32% ± 14% | |
transit amplifying cell | 3 studies | 38% ± 24% | |
renal principal cell | 3 studies | 24% ± 8% | |
mucus secreting cell | 3 studies | 26% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 18 studies | 46% ± 21% | |
lung | 8 studies | 23% ± 6% | |
eye | 8 studies | 31% ± 15% | |
heart | 4 studies | 26% ± 3% | |
adipose | 4 studies | 27% ± 8% | |
peripheral blood | 3 studies | 23% ± 3% | |
liver | 3 studies | 35% ± 13% | |
intestine | 3 studies | 22% ± 6% | |
kidney | 3 studies | 28% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 11543.68 | 245 / 245 | 100% | 30.12 | 502 / 502 |
esophagus | 100% | 9240.68 | 1444 / 1445 | 100% | 34.63 | 183 / 183 |
breast | 100% | 8703.99 | 459 / 459 | 100% | 52.05 | 1117 / 1118 |
uterus | 100% | 12933.78 | 170 / 170 | 100% | 31.38 | 458 / 459 |
ovary | 100% | 16300.71 | 180 / 180 | 100% | 36.07 | 429 / 430 |
skin | 100% | 6658.33 | 1808 / 1809 | 100% | 37.87 | 471 / 472 |
thymus | 100% | 13700.27 | 653 / 653 | 100% | 38.27 | 603 / 605 |
lung | 100% | 7782.08 | 577 / 578 | 99% | 30.82 | 1149 / 1155 |
bladder | 100% | 9521.90 | 21 / 21 | 99% | 25.66 | 500 / 504 |
brain | 99% | 9074.45 | 2624 / 2642 | 100% | 38.62 | 704 / 705 |
intestine | 100% | 9745.96 | 966 / 966 | 99% | 20.15 | 521 / 527 |
pancreas | 99% | 4440.40 | 326 / 328 | 99% | 27.93 | 177 / 178 |
adrenal gland | 100% | 8428.85 | 258 / 258 | 98% | 24.19 | 226 / 230 |
stomach | 100% | 6497.21 | 359 / 359 | 98% | 23.11 | 281 / 286 |
kidney | 100% | 8451.55 | 89 / 89 | 97% | 25.14 | 872 / 901 |
liver | 100% | 4339.62 | 226 / 226 | 93% | 19.37 | 376 / 406 |
adipose | 100% | 7636.46 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 7818.35 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 23.49 | 29 / 29 |
spleen | 100% | 9794.18 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 25.11 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.04 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 25.08 | 79 / 80 |
muscle | 98% | 3669.77 | 790 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 4611.76 | 842 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 73% | 3233.82 | 674 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0051301 | Biological process | cell division |
GO_0007064 | Biological process | mitotic sister chromatid cohesion |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0051382 | Biological process | kinetochore assembly |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0005737 | Cellular component | cytoplasm |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | POGZ |
Protein name | Pogo transposable element derived with ZNF domain Pogo transposable element with ZNF domain (Suppressor of hairy wing homolog 5) (Zinc finger protein 280E) (Zinc finger protein 635) Pogo transposable element with ZNF domain NPC intracellular cholesterol transporter 1 |
Synonyms | KIAA0461 Nbla00003 ZNF635 SUHW5 ZNF280E |
Description | FUNCTION: Plays a role in mitotic cell cycle progression and is involved in kinetochore assembly and mitotic sister chromatid cohesion. Probably through its association with CBX5 plays a role in mitotic chromosome segregation by regulating aurora kinase B/AURKB activation and AURKB and CBX5 dissociation from chromosome arms . Promotes the repair of DNA double-strand breaks through the homologous recombination pathway . . |
Accessions | ENST00000710270.1 ENST00000368863.6 [Q7Z3K3-5] ENST00000703169.1 H7C238 ENST00000491586.5 [Q7Z3K3-3] ENST00000439756.2 [Q7Z3K3-1] A0A2S0X0P7 Q7Z3K3 ENST00000531094.5 [Q7Z3K3-7] A0A8V8TQ67 A0A0G2JHK5 ENST00000441516.1 ENST00000594456.1 ENST00000271715.7 [Q7Z3K3-1] A0A8V8TQQ8 ENST00000703168.1 ENST00000533351.5 E9PJY9 H0YCT3 ENST00000450842.1 E9PIR8 ENST00000439756.1 ENST00000392723.6 [Q7Z3K3-2] A6PW30 ENST00000533461.5 ENST00000409503.5 [Q7Z3K3-6] ENST00000529669.1 A0AA34QVU4 A0A2S0X0J5 M0R2X2 |