Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 5088.59 | 578 / 578 | 100% | 49.19 | 1155 / 1155 |
stomach | 100% | 2805.84 | 359 / 359 | 100% | 37.43 | 286 / 286 |
breast | 100% | 6302.52 | 459 / 459 | 100% | 58.60 | 1117 / 1118 |
thymus | 100% | 8008.66 | 653 / 653 | 100% | 62.42 | 604 / 605 |
prostate | 100% | 4204.53 | 245 / 245 | 100% | 37.49 | 501 / 502 |
ovary | 100% | 3276.63 | 180 / 180 | 100% | 34.71 | 429 / 430 |
esophagus | 100% | 5216.01 | 1445 / 1445 | 99% | 50.04 | 182 / 183 |
pancreas | 100% | 2974.33 | 328 / 328 | 99% | 35.52 | 177 / 178 |
bladder | 100% | 4366.14 | 21 / 21 | 99% | 47.93 | 501 / 504 |
uterus | 100% | 3858.21 | 170 / 170 | 99% | 63.07 | 456 / 459 |
intestine | 100% | 4430.73 | 966 / 966 | 99% | 37.64 | 523 / 527 |
kidney | 100% | 4386.35 | 89 / 89 | 99% | 43.97 | 894 / 901 |
skin | 100% | 6211.40 | 1809 / 1809 | 99% | 35.31 | 468 / 472 |
brain | 98% | 2095.17 | 2583 / 2642 | 100% | 23.26 | 705 / 705 |
adrenal gland | 100% | 3094.74 | 258 / 258 | 96% | 20.58 | 221 / 230 |
liver | 100% | 1777.21 | 225 / 226 | 96% | 22.76 | 388 / 406 |
adipose | 100% | 6869.47 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5178.31 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 120.61 | 29 / 29 |
spleen | 100% | 5509.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 73.39 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.53 | 1 / 1 |
muscle | 99% | 2532.44 | 798 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 6100.21 | 919 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 2746.32 | 847 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 19.39 | 74 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032355 | Biological process | response to estradiol |
GO_0048568 | Biological process | embryonic organ development |
GO_0006346 | Biological process | DNA methylation-dependent heterochromatin formation |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006338 | Biological process | chromatin remodeling |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0031667 | Biological process | response to nutrient levels |
GO_0042711 | Biological process | maternal behavior |
GO_0030177 | Biological process | positive regulation of Wnt signaling pathway |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0003229 | Biological process | ventricular cardiac muscle tissue development |
GO_0009612 | Biological process | response to mechanical stimulus |
GO_0016055 | Biological process | Wnt signaling pathway |
GO_0071407 | Biological process | cellular response to organic cyclic compound |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_0000792 | Cellular component | heterochromatin |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0016581 | Cellular component | NuRD complex |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0060090 | Molecular function | molecular adaptor activity |
GO_0035197 | Molecular function | siRNA binding |
GO_0031492 | Molecular function | nucleosomal DNA binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003696 | Molecular function | satellite DNA binding |
GO_0008327 | Molecular function | methyl-CpG binding |
GO_0005515 | Molecular function | protein binding |
GO_0070742 | Molecular function | C2H2 zinc finger domain binding |
Gene name | MBD2 |
Protein name | Methyl-CpG-binding domain protein 2 (Demethylase) (DMTase) (Methyl-CpG-binding protein MBD2) Methyl-CpG binding domain protein 2 |
Synonyms | |
Description | FUNCTION: Binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides . Binds hemimethylated DNA as well . Recruits histone deacetylases and DNA methyltransferases to chromatin . Acts as a component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin . Acts as a transcriptional repressor and plays a role in gene silencing . Functions as a scaffold protein, targeting GATAD2A and GATAD2B to chromatin to promote repression . May enhance the activation of some unmethylated cAMP-responsive promoters . . |
Accessions | X6RBL6 Q9UBB5 ENST00000578272.1 J3KSA7 ENST00000256429.8 [Q9UBB5-1] ENST00000398398.6 ENST00000583046.1 [Q9UBB5-3] |