Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 19 studies | 82% ± 18% | |
peripheral blood | 19 studies | 91% ± 15% | |
intestine | 13 studies | 87% ± 17% | |
brain | 13 studies | 40% ± 22% | |
eye | 10 studies | 62% ± 21% | |
kidney | 8 studies | 79% ± 20% | |
liver | 7 studies | 69% ± 26% | |
bone marrow | 6 studies | 90% ± 10% | |
pancreas | 5 studies | 84% ± 18% | |
uterus | 5 studies | 91% ± 15% | |
lymph node | 4 studies | 99% ± 1% | |
placenta | 4 studies | 88% ± 19% | |
heart | 4 studies | 44% ± 22% | |
adipose | 4 studies | 46% ± 31% | |
esophagus | 4 studies | 72% ± 22% | |
prostate | 4 studies | 88% ± 20% | |
breast | 4 studies | 97% ± 4% | |
skin | 3 studies | 77% ± 28% | |
stomach | 3 studies | 67% ± 17% | |
thymus | 3 studies | 78% ± 30% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 54466.36 | 1445 / 1445 | 100% | 488.76 | 183 / 183 |
ovary | 100% | 139415.28 | 180 / 180 | 100% | 1236.95 | 430 / 430 |
skin | 100% | 83836.93 | 1809 / 1809 | 100% | 702.20 | 472 / 472 |
intestine | 100% | 53941.57 | 966 / 966 | 100% | 1053.26 | 526 / 527 |
uterus | 100% | 70468.51 | 170 / 170 | 100% | 756.11 | 458 / 459 |
prostate | 100% | 55326.67 | 245 / 245 | 100% | 892.92 | 500 / 502 |
pancreas | 100% | 50301.98 | 328 / 328 | 99% | 602.25 | 177 / 178 |
thymus | 100% | 42752.23 | 652 / 653 | 100% | 700.35 | 602 / 605 |
stomach | 100% | 42704.87 | 359 / 359 | 99% | 852.21 | 284 / 286 |
breast | 100% | 64651.50 | 459 / 459 | 99% | 719.31 | 1107 / 1118 |
bladder | 100% | 56593.00 | 21 / 21 | 99% | 896.97 | 499 / 504 |
lung | 100% | 44943.90 | 576 / 578 | 99% | 687.26 | 1147 / 1155 |
kidney | 100% | 33665.47 | 89 / 89 | 97% | 428.83 | 878 / 901 |
brain | 96% | 17450.84 | 2530 / 2642 | 98% | 438.33 | 694 / 705 |
adrenal gland | 100% | 36140.66 | 258 / 258 | 90% | 368.19 | 206 / 230 |
liver | 98% | 18926.54 | 222 / 226 | 88% | 317.89 | 357 / 406 |
eye | 0% | 0 | 0 / 0 | 100% | 1283.17 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 1402.62 | 29 / 29 |
spleen | 100% | 70105.76 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 627.08 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 654.75 | 1 / 1 |
blood vessel | 100% | 42673.08 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 52085.69 | 1202 / 1204 | 0% | 0 | 0 / 0 |
muscle | 98% | 27236.60 | 790 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 53825.41 | 905 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 24522.93 | 832 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042104 | Biological process | positive regulation of activated T cell proliferation |
GO_1901224 | Biological process | positive regulation of non-canonical NF-kappaB signal transduction |
GO_0006281 | Biological process | DNA repair |
GO_1905053 | Biological process | positive regulation of base-excision repair |
GO_0051301 | Biological process | cell division |
GO_0031334 | Biological process | positive regulation of protein-containing complex assembly |
GO_2001272 | Biological process | positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis |
GO_0051092 | Biological process | positive regulation of NF-kappaB transcription factor activity |
GO_0045738 | Biological process | negative regulation of DNA repair |
GO_2001235 | Biological process | positive regulation of apoptotic signaling pathway |
GO_0070301 | Biological process | cellular response to hydrogen peroxide |
GO_0050862 | Biological process | positive regulation of T cell receptor signaling pathway |
GO_0006412 | Biological process | translation |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0042981 | Biological process | regulation of apoptotic process |
GO_0051225 | Biological process | spindle assembly |
GO_0032079 | Biological process | positive regulation of endodeoxyribonuclease activity |
GO_0061481 | Biological process | response to TNF agonist |
GO_0007059 | Biological process | chromosome segregation |
GO_0045739 | Biological process | positive regulation of DNA repair |
GO_0006413 | Biological process | translational initiation |
GO_0032743 | Biological process | positive regulation of interleukin-2 production |
GO_0017148 | Biological process | negative regulation of translation |
GO_0002181 | Biological process | cytoplasmic translation |
GO_0043507 | Biological process | positive regulation of JUN kinase activity |
GO_1902231 | Biological process | positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage |
GO_0034614 | Biological process | cellular response to reactive oxygen species |
GO_0006974 | Biological process | DNA damage response |
GO_0031116 | Biological process | positive regulation of microtubule polymerization |
GO_0071356 | Biological process | cellular response to tumor necrosis factor |
GO_0006915 | Biological process | apoptotic process |
GO_0006284 | Biological process | base-excision repair |
GO_0031397 | Biological process | negative regulation of protein ubiquitination |
GO_0005840 | Cellular component | ribosome |
GO_0005634 | Cellular component | nucleus |
GO_0005730 | Cellular component | nucleolus |
GO_0072686 | Cellular component | mitotic spindle |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0071159 | Cellular component | NF-kappaB complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0014069 | Cellular component | postsynaptic density |
GO_0005737 | Cellular component | cytoplasm |
GO_0032587 | Cellular component | ruffle membrane |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0005925 | Cellular component | focal adhesion |
GO_0005829 | Cellular component | cytosol |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0051879 | Molecular function | Hsp90 protein binding |
GO_0003735 | Molecular function | structural constituent of ribosome |
GO_0051018 | Molecular function | protein kinase A binding |
GO_0051536 | Molecular function | iron-sulfur cluster binding |
GO_0003906 | Molecular function | DNA-(apurinic or apyrimidinic site) endonuclease activity |
GO_0019900 | Molecular function | kinase binding |
GO_0097100 | Molecular function | supercoiled DNA binding |
GO_0030544 | Molecular function | Hsp70 protein binding |
GO_0032357 | Molecular function | oxidized purine DNA binding |
GO_0019899 | Molecular function | enzyme binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0032358 | Molecular function | oxidized pyrimidine DNA binding |
GO_0003723 | Molecular function | RNA binding |
GO_0044390 | Molecular function | ubiquitin-like protein conjugating enzyme binding |
GO_0005515 | Molecular function | protein binding |
GO_0003677 | Molecular function | DNA binding |
GO_0140078 | Molecular function | class I DNA-(apurinic or apyrimidinic site) endonuclease activity |
GO_0019104 | Molecular function | DNA N-glycosylase activity |
GO_0000977 | Molecular function | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
GO_0015631 | Molecular function | tubulin binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0019901 | Molecular function | protein kinase binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0004520 | Molecular function | DNA endonuclease activity |
GO_0070181 | Molecular function | small ribosomal subunit rRNA binding |
GO_0003684 | Molecular function | damaged DNA binding |
Gene name | RPS3 |
Protein name | Ribosomal protein S3 40S ribosomal protein S3 Small ribosomal subunit protein uS3 (EC 4.2.99.18) (40S ribosomal protein S3) Small ribosomal subunit protein uS3 (40S ribosomal protein S3) (EC 4.2.99.18) |
Synonyms | OK/SW-cl.26 |
Description | FUNCTION: Component of the small ribosomal subunit . The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . Has endonuclease activity and plays a role in repair of damaged DNA . Cleaves phosphodiester bonds of DNAs containing altered bases with broad specificity and cleaves supercoiled DNA more efficiently than relaxed DNA . Displays high binding affinity for 7,8-dihydro-8-oxoguanine (8-oxoG), a common DNA lesion caused by reactive oxygen species (ROS) . Has also been shown to bind with similar affinity to intact and damaged DNA . Stimulates the N-glycosylase activity of the base excision protein OGG1 . Enhances the uracil excision activity of UNG1 . Also stimulates the cleavage of the phosphodiester backbone by APEX1 . When located in the mitochondrion, reduces cellular ROS levels and mitochondrial DNA damage . Has also been shown to negatively regulate DNA repair in cells exposed to hydrogen peroxide . Plays a role in regulating transcription as part of the NF-kappa-B p65-p50 complex where it binds to the RELA/p65 subunit, enhances binding of the complex to DNA and promotes transcription of target genes . Represses its own translation by binding to its cognate mRNA . Binds to and protects TP53/p53 from MDM2-mediated ubiquitination . Involved in spindle formation and chromosome movement during mitosis by regulating microtubule polymerization . Involved in induction of apoptosis through its role in activation of CASP8 . Induces neuronal apoptosis by interacting with the E2F1 transcription factor and acting synergistically with it to up-regulate pro-apoptotic proteins BCL2L11/BIM and HRK/Dp5 . Interacts with TRADD following exposure to UV radiation and induces apoptosis by caspase-dependent JNK activation . . |
Accessions | ENST00000527446.5 [P23396-1] ENST00000525933.1 E9PSF4 ENST00000525690.1 P23396 ENST00000530164.5 ENST00000422465.6 ENST00000527273.5 H0YES8 ENST00000528439.5 ENST00000528847.1 ENST00000534440.5 ENST00000524851.5 [P23396-1] ENST00000278572.10 [P23396-2] A7E2S3 E9PQ96 Q9NQS8 ENST00000526248.5 ENST00000526608.5 E9PJH4 E9PK82 ENST00000532872.5 H0YF32 H0YCJ7 E9PPU1 E9PL09 E9PJN9 ENST00000530170.1 ENST00000531188.6 [P23396-1] ENST00000530721.5 H0YEU2 E9PQX2 F2Z2S8 |