Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 21 studies | 61% ± 16% | |
lung | 18 studies | 62% ± 14% | |
intestine | 15 studies | 52% ± 22% | |
brain | 13 studies | 36% ± 16% | |
kidney | 9 studies | 65% ± 21% | |
eye | 8 studies | 57% ± 20% | |
bone marrow | 7 studies | 46% ± 18% | |
lymph node | 7 studies | 71% ± 15% | |
liver | 7 studies | 56% ± 23% | |
uterus | 6 studies | 63% ± 23% | |
pancreas | 5 studies | 66% ± 21% | |
placenta | 4 studies | 58% ± 23% | |
prostate | 4 studies | 56% ± 17% | |
breast | 4 studies | 73% ± 7% | |
ovary | 3 studies | 52% ± 20% | |
heart | 3 studies | 30% ± 10% | |
adipose | 3 studies | 44% ± 17% | |
adrenal gland | 3 studies | 71% ± 21% | |
esophagus | 3 studies | 65% ± 14% | |
skin | 3 studies | 62% ± 7% | |
stomach | 3 studies | 48% ± 20% | |
thymus | 3 studies | 77% ± 25% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 47722.38 | 359 / 359 | 99% | 879.76 | 284 / 286 |
esophagus | 100% | 44529.53 | 1441 / 1445 | 99% | 716.45 | 182 / 183 |
brain | 99% | 48195.86 | 2616 / 2642 | 100% | 875.14 | 704 / 705 |
intestine | 100% | 38237.94 | 962 / 966 | 99% | 958.49 | 522 / 527 |
prostate | 100% | 27178.06 | 245 / 245 | 99% | 817.92 | 495 / 502 |
ovary | 100% | 36937.00 | 180 / 180 | 99% | 660.51 | 424 / 430 |
lung | 99% | 47028.91 | 573 / 578 | 99% | 758.82 | 1145 / 1155 |
pancreas | 99% | 63725.69 | 326 / 328 | 99% | 574.39 | 176 / 178 |
breast | 98% | 27935.26 | 452 / 459 | 98% | 957.15 | 1101 / 1118 |
bladder | 100% | 37479.67 | 21 / 21 | 96% | 775.15 | 485 / 504 |
thymus | 100% | 36212.04 | 651 / 653 | 96% | 551.12 | 580 / 605 |
uterus | 98% | 28580.08 | 167 / 170 | 97% | 675.91 | 445 / 459 |
kidney | 100% | 52729.62 | 89 / 89 | 93% | 536.92 | 839 / 901 |
skin | 93% | 35305.29 | 1677 / 1809 | 97% | 1047.88 | 460 / 472 |
liver | 92% | 25780.55 | 209 / 226 | 93% | 446.55 | 379 / 406 |
adrenal gland | 99% | 52292.96 | 256 / 258 | 87% | 616.69 | 199 / 230 |
lymph node | 0% | 0 | 0 / 0 | 100% | 1173.34 | 29 / 29 |
muscle | 100% | 71485.18 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 46433.25 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 693.26 | 45 / 45 |
adipose | 100% | 37750.30 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 35798.55 | 1328 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 684.07 | 77 / 80 |
heart | 96% | 46408.54 | 825 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 45063.69 | 862 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006986 | Biological process | response to unfolded protein |
GO_1990834 | Biological process | response to odorant |
GO_0044829 | Biological process | positive regulation by host of viral genome replication |
GO_0061635 | Biological process | regulation of protein complex stability |
GO_0046034 | Biological process | ATP metabolic process |
GO_0014823 | Biological process | response to activity |
GO_0009267 | Biological process | cellular response to starvation |
GO_0001916 | Biological process | positive regulation of T cell mediated cytotoxicity |
GO_0021549 | Biological process | cerebellum development |
GO_0009410 | Biological process | response to xenobiotic stimulus |
GO_0051085 | Biological process | chaperone cofactor-dependent protein refolding |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0070301 | Biological process | cellular response to hydrogen peroxide |
GO_0007519 | Biological process | skeletal muscle tissue development |
GO_1902904 | Biological process | negative regulation of supramolecular fiber organization |
GO_0045862 | Biological process | positive regulation of proteolysis |
GO_0030900 | Biological process | forebrain development |
GO_0071383 | Biological process | cellular response to steroid hormone stimulus |
GO_0071276 | Biological process | cellular response to cadmium ion |
GO_0001822 | Biological process | kidney development |
GO_0061738 | Biological process | late endosomal microautophagy |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0061684 | Biological process | chaperone-mediated autophagy |
GO_0006606 | Biological process | protein import into nucleus |
GO_0098880 | Biological process | maintenance of postsynaptic specialization structure |
GO_0010667 | Biological process | negative regulation of cardiac muscle cell apoptotic process |
GO_0044743 | Biological process | protein transmembrane import into intracellular organelle |
GO_0044849 | Biological process | estrous cycle |
GO_0032355 | Biological process | response to estradiol |
GO_1904589 | Biological process | regulation of protein import |
GO_1904592 | Biological process | positive regulation of protein refolding |
GO_1900226 | Biological process | negative regulation of NLRP3 inflammasome complex assembly |
GO_1990832 | Biological process | slow axonal transport |
GO_0048026 | Biological process | positive regulation of mRNA splicing, via spliceosome |
GO_0045471 | Biological process | response to ethanol |
GO_0072318 | Biological process | clathrin coat disassembly |
GO_0043254 | Biological process | regulation of protein-containing complex assembly |
GO_0010045 | Biological process | response to nickel cation |
GO_0097214 | Biological process | positive regulation of lysosomal membrane permeability |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0032570 | Biological process | response to progesterone |
GO_0000082 | Biological process | G1/S transition of mitotic cell cycle |
GO_0050766 | Biological process | positive regulation of phagocytosis |
GO_0016191 | Biological process | synaptic vesicle uncoating |
GO_0034605 | Biological process | cellular response to heat |
GO_0061024 | Biological process | membrane organization |
GO_0006457 | Biological process | protein folding |
GO_0061740 | Biological process | protein targeting to lysosome involved in chaperone-mediated autophagy |
GO_0042026 | Biological process | protein refolding |
GO_1904764 | Biological process | chaperone-mediated autophagy translocation complex disassembly |
GO_0031647 | Biological process | regulation of protein stability |
GO_0099175 | Biological process | regulation of postsynapse organization |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0061202 | Cellular component | clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane |
GO_0043195 | Cellular component | terminal bouton |
GO_0000974 | Cellular component | Prp19 complex |
GO_0009986 | Cellular component | cell surface |
GO_1904813 | Cellular component | ficolin-1-rich granule lumen |
GO_0098684 | Cellular component | photoreceptor ribbon synapse |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0099634 | Cellular component | postsynaptic specialization membrane |
GO_0005634 | Cellular component | nucleus |
GO_0005730 | Cellular component | nucleolus |
GO_0005576 | Cellular component | extracellular region |
GO_0098690 | Cellular component | glycinergic synapse |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005882 | Cellular component | intermediate filament |
GO_0005770 | Cellular component | late endosome |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005615 | Cellular component | extracellular space |
GO_0005886 | Cellular component | plasma membrane |
GO_0005874 | Cellular component | microtubule |
GO_0098575 | Cellular component | lumenal side of lysosomal membrane |
GO_0016020 | Cellular component | membrane |
GO_0043198 | Cellular component | dendritic shaft |
GO_0043204 | Cellular component | perikaryon |
GO_0034774 | Cellular component | secretory granule lumen |
GO_0072562 | Cellular component | blood microparticle |
GO_0014069 | Cellular component | postsynaptic density |
GO_0099524 | Cellular component | postsynaptic cytosol |
GO_0005776 | Cellular component | autophagosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0043197 | Cellular component | dendritic spine |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0001917 | Cellular component | photoreceptor inner segment |
GO_1990836 | Cellular component | lysosomal matrix |
GO_0005925 | Cellular component | focal adhesion |
GO_0101031 | Cellular component | protein folding chaperone complex |
GO_0005829 | Cellular component | cytosol |
GO_0099523 | Cellular component | presynaptic cytosol |
GO_0042470 | Cellular component | melanosome |
GO_1990833 | Molecular function | clathrin-uncoating ATPase activity |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0031686 | Molecular function | A1 adenosine receptor binding |
GO_0001664 | Molecular function | G protein-coupled receptor binding |
GO_0005524 | Molecular function | ATP binding |
GO_0140545 | Molecular function | ATP-dependent protein disaggregase activity |
GO_0044183 | Molecular function | protein folding chaperone |
GO_0051082 | Molecular function | unfolded protein binding |
GO_0140597 | Molecular function | protein carrier chaperone |
GO_0023026 | Molecular function | MHC class II protein complex binding |
GO_0019899 | Molecular function | enzyme binding |
GO_0043531 | Molecular function | ADP binding |
GO_1904593 | Molecular function | prostaglandin binding |
GO_0055131 | Molecular function | C3HC4-type RING finger domain binding |
GO_0042277 | Molecular function | peptide binding |
GO_0031072 | Molecular function | heat shock protein binding |
GO_0001786 | Molecular function | phosphatidylserine binding |
GO_0051087 | Molecular function | protein-folding chaperone binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0045296 | Molecular function | cadherin binding |
GO_0140662 | Molecular function | ATP-dependent protein folding chaperone |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | HSPA8 |
Protein name | Heat shock cognate 71 kDa protein (EC 3.6.4.10) (Heat shock 70 kDa protein 8) (Lipopolysaccharide-associated protein 1) (LAP-1) (LPS-associated protein 1) Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) |
Synonyms | HSC70 hCG_2032950 HSPA10 HEL-S-72p HEL-33 HSP73 |
Description | FUNCTION: Molecular chaperone implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, chaperone-mediated autophagy, activation of proteolysis of misfolded proteins, formation and dissociation of protein complexes, and antigen presentation. Plays a pivotal role in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation . This is achieved through cycles of ATP binding, ATP hydrolysis and ADP release, mediated by co-chaperones . The co-chaperones have been shown to not only regulate different steps of the ATPase cycle of HSP70, but they also have an individual specificity such that one co-chaperone may promote folding of a substrate while another may promote degradation . The affinity of HSP70 for polypeptides is regulated by its nucleotide bound state. In the ATP-bound form, it has a low affinity for substrate proteins. However, upon hydrolysis of the ATP to ADP, it undergoes a conformational change that increases its affinity for substrate proteins. HSP70 goes through repeated cycles of ATP hydrolysis and nucleotide exchange, which permits cycles of substrate binding and release. The HSP70-associated co-chaperones are of three types: J-domain co-chaperones HSP40s (stimulate ATPase hydrolysis by HSP70), the nucleotide exchange factors (NEF) such as BAG1/2/3 (facilitate conversion of HSP70 from the ADP-bound to the ATP-bound state thereby promoting substrate release), and the TPR domain chaperones such as HOPX and STUB1 . Plays a critical role in mitochondrial import, delivers preproteins to the mitochondrial import receptor TOMM70 . Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Component of the PRP19-CDC5L complex that forms an integral part of the spliceosome and is required for activating pre-mRNA splicing. May have a scaffolding role in the spliceosome assembly as it contacts all other components of the core complex. Binds bacterial lipopolysaccharide (LPS) and mediates LPS-induced inflammatory response, including TNF secretion by monocytes . Substrate recognition component in chaperone-mediated autophagy (CMA), a selective protein degradation process that mediates degradation of proteins with a -KFERQ motif: HSPA8/HSC70 specifically recognizes and binds cytosolic proteins bearing a -KFERQ motif and promotes their recruitment to the surface of the lysosome where they bind to lysosomal protein LAMP2 . KFERQ motif-containing proteins are eventually transported into the lysosomal lumen where they are degraded . In conjunction with LAMP2, facilitates MHC class II presentation of cytoplasmic antigens by guiding antigens to the lysosomal membrane for interaction with LAMP2 which then elicits MHC class II presentation of peptides to the cell membrane . Participates in the ER-associated degradation (ERAD) quality control pathway in conjunction with J domain-containing co-chaperones and the E3 ligase STUB1 . It is recruited to clathrin-coated vesicles through its interaction with DNAJC6 leading to activation of HSPA8/HSC70 ATPase activity and therefore uncoating of clathrin-coated vesicles (By similarity). . |
Accessions | ENST00000453788.6 [P11142-2] ENST00000534319.5 E9PN89 ENST00000532636.5 [P11142-1] ENST00000528292.5 E9PQQ4 Q96H53 E9PN25 ENST00000533540.5 ENST00000525463.5 ENST00000526110.5 E9PQK7 ENST00000525624.5 ENST00000530391.1 E9PM13 ENST00000527387.5 E9PPY6 P11142 ENST00000532182.5 ENST00000227378.7 [P11142-1] E9PNE6 ENST00000526686.1 A8K7Q2 E9PK54 E9PS65 ENST00000524552.5 V9HW22 ENST00000524590.5 E9PKE3 ENST00000534624.6 [P11142-1] E9PI65 Q96IS6 E9PLF4 ENST00000534567.5 |