RPS3A | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	49 studies	92% ± 17%	Explore
natural killer cell	43 studies	90% ± 18%	Explore
macrophage	41 studies	83% ± 22%	Explore
endothelial cell	41 studies	76% ± 28%	Explore
T cell	40 studies	82% ± 25%	Explore
fibroblast	39 studies	85% ± 24%	Explore
CD8-positive, alpha-beta T cell	37 studies	92% ± 13%	Explore
CD4-positive, alpha-beta T cell	36 studies	90% ± 18%	Explore
pericyte	34 studies	83% ± 26%	Explore
conventional dendritic cell	31 studies	95% ± 12%	Explore
plasmacytoid dendritic cell	30 studies	95% ± 10%	Explore
smooth muscle cell	28 studies	84% ± 26%	Explore
dendritic cell	27 studies	88% ± 22%	Explore
plasma cell	27 studies	81% ± 26%	Explore
classical monocyte	26 studies	89% ± 17%	Explore
regulatory T cell	26 studies	95% ± 10%	Explore
non-classical monocyte	25 studies	91% ± 17%	Explore
epithelial cell	25 studies	84% ± 22%	Explore
endothelial cell of lymphatic vessel	24 studies	87% ± 19%	Explore
mature NK T cell	24 studies	87% ± 21%	Explore
mast cell	23 studies	87% ± 16%	Explore
monocyte	23 studies	85% ± 21%	Explore
gamma-delta T cell	21 studies	93% ± 12%	Explore
memory B cell	21 studies	98% ± 4%	Explore
basal cell	20 studies	92% ± 14%	Explore
naive B cell	18 studies	97% ± 6%	Explore
connective tissue cell	18 studies	93% ± 12%	Explore
mucosal invariant T cell	17 studies	95% ± 10%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	95% ± 12%	Explore
endothelial cell of artery	16 studies	79% ± 20%	Explore
capillary endothelial cell	16 studies	70% ± 22%	Explore
ciliated cell	15 studies	85% ± 13%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	91% ± 15%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	91% ± 14%	Explore
vein endothelial cell	15 studies	80% ± 23%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	97% ± 9%	Explore
myofibroblast cell	14 studies	89% ± 21%	Explore
myeloid cell	14 studies	83% ± 22%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	91% ± 18%	Explore
neutrophil	13 studies	63% ± 29%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	87% ± 22%	Explore
innate lymphoid cell	12 studies	96% ± 5%	Explore
plasmablast	12 studies	95% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	90% ± 16%	Explore
goblet cell	12 studies	78% ± 24%	Explore
endothelial cell of vascular tree	12 studies	86% ± 24%	Explore
secretory cell	11 studies	95% ± 6%	Explore
erythrocyte	11 studies	71% ± 25%	Explore
mesothelial cell	11 studies	80% ± 28%	Explore
T follicular helper cell	10 studies	98% ± 2%	Explore
progenitor cell	10 studies	92% ± 15%	Explore
leukocyte	10 studies	84% ± 26%	Explore
hematopoietic stem cell	10 studies	85% ± 29%	Explore
type I pneumocyte	9 studies	70% ± 25%	Explore
type II pneumocyte	9 studies	80% ± 25%	Explore
astrocyte	9 studies	43% ± 23%	Explore
IgG plasma cell	9 studies	85% ± 17%	Explore
club cell	8 studies	88% ± 19%	Explore
platelet	8 studies	59% ± 26%	Explore
abnormal cell	8 studies	79% ± 28%	Explore
neuron	8 studies	58% ± 33%	Explore
enterocyte	8 studies	73% ± 23%	Explore
enteroendocrine cell	8 studies	79% ± 28%	Explore
IgA plasma cell	8 studies	83% ± 22%	Explore
microglial cell	8 studies	72% ± 27%	Explore
mononuclear phagocyte	7 studies	86% ± 22%	Explore
epithelial cell of proximal tubule	7 studies	83% ± 19%	Explore
transit amplifying cell	7 studies	80% ± 23%	Explore
retinal rod cell	7 studies	59% ± 23%	Explore
alveolar macrophage	6 studies	81% ± 28%	Explore
respiratory goblet cell	6 studies	86% ± 13%	Explore
oligodendrocyte	6 studies	23% ± 6%	Explore
kidney loop of Henle epithelial cell	6 studies	85% ± 20%	Explore
renal alpha-intercalated cell	6 studies	98% ± 1%	Explore
intestinal crypt stem cell	6 studies	83% ± 24%	Explore
amacrine cell	6 studies	54% ± 21%	Explore
retinal ganglion cell	6 studies	66% ± 20%	Explore
precursor B cell	6 studies	99% ± 1%	Explore
brush cell	6 studies	84% ± 16%	Explore
glial cell	6 studies	69% ± 27%	Explore
immature B cell	6 studies	99% ± 2%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	98% ± 3%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	86% ± 28%	Explore
CD4-positive helper T cell	5 studies	95% ± 4%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	96% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	93% ± 7%	Explore
hematopoietic precursor cell	5 studies	93% ± 8%	Explore
ionocyte	5 studies	93% ± 4%	Explore
oligodendrocyte precursor cell	5 studies	46% ± 30%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	97% ± 3%	Explore
megakaryocyte	5 studies	82% ± 17%	Explore
erythroblast	5 studies	90% ± 7%	Explore
OFF-bipolar cell	5 studies	72% ± 21%	Explore
ON-bipolar cell	5 studies	69% ± 22%	Explore
retinal cone cell	5 studies	62% ± 25%	Explore
lymphocyte	5 studies	85% ± 28%	Explore
T-helper 17 cell	5 studies	99% ± 1%	Explore
group 3 innate lymphoid cell	5 studies	98% ± 1%	Explore
Mueller cell	5 studies	70% ± 15%	Explore
double negative thymocyte	5 studies	99% ± 1%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	96% ± 7%	Explore
granulocyte	5 studies	96% ± 4%	Explore
intermediate monocyte	5 studies	90% ± 11%	Explore
melanocyte	5 studies	78% ± 25%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	79% ± 22%	Explore
duct epithelial cell	4 studies	96% ± 2%	Explore
exhausted T cell	4 studies	93% ± 8%	Explore
precursor cell	4 studies	88% ± 18%	Explore
pancreatic A cell	4 studies	96% ± 4%	Explore
type B pancreatic cell	4 studies	93% ± 9%	Explore
endothelial cell of sinusoid	4 studies	44% ± 30%	Explore
glutamatergic neuron	4 studies	31% ± 2%	Explore
glomerular endothelial cell	4 studies	83% ± 11%	Explore
kidney connecting tubule epithelial cell	4 studies	94% ± 4%	Explore
podocyte	4 studies	88% ± 11%	Explore
GABAergic amacrine cell	4 studies	56% ± 16%	Explore
glycinergic amacrine cell	4 studies	59% ± 17%	Explore
pro-B cell	4 studies	99% ± 1%	Explore
neuroendocrine cell	4 studies	98% ± 2%	Explore
adventitial cell	4 studies	87% ± 15%	Explore
mucus secreting cell	4 studies	79% ± 31%	Explore
retina horizontal cell	4 studies	60% ± 14%	Explore
acinar cell	4 studies	86% ± 20%	Explore
muscle cell	4 studies	63% ± 19%	Explore
germinal center B cell	4 studies	99% ± 0%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	97% ± 5%	Explore
hepatocyte	4 studies	57% ± 33%	Explore
IgM plasma cell	4 studies	88% ± 13%	Explore
interneuron	4 studies	47% ± 30%	Explore
T-helper 1 cell	4 studies	99% ± 1%	Explore
deuterosomal cell	3 studies	92% ± 1%	Explore
pancreatic D cell	3 studies	97% ± 3%	Explore
renal beta-intercalated cell	3 studies	99% ± 1%	Explore
neural crest cell	3 studies	100% ± 0%	Explore
paneth cell	3 studies	95% ± 6%	Explore
retinal bipolar neuron	3 studies	63% ± 21%	Explore
renal principal cell	3 studies	91% ± 5%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	100% ± 0%	Explore
placental villous trophoblast	3 studies	100% ± 0%	Explore
common myeloid progenitor	3 studies	71% ± 39%	Explore
Schwann cell	3 studies	71% ± 35%	Explore
serous secreting cell	3 studies	85% ± 8%	Explore
tissue-resident macrophage	3 studies	71% ± 29%	Explore
follicular B cell	3 studies	99% ± 1%	Explore
intraepithelial lymphocyte	3 studies	98% ± 1%	Explore
rod bipolar cell	3 studies	79% ± 15%	Explore
myoepithelial cell	3 studies	100% ± 0%	Explore
cholangiocyte	3 studies	46% ± 34%	Explore
inflammatory macrophage	3 studies	84% ± 18%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
retinal pigment epithelial cell	3 studies	56% ± 22%	Explore
pancreatic ductal cell	3 studies	93% ± 3%	Explore
granulocyte monocyte progenitor cell	3 studies	78% ± 28%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	100% ± 0%	Explore
keratinocyte	3 studies	97% ± 4%	Explore
GABAergic neuron	3 studies	25% ± 4%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	99% ± 1%	Explore
double-positive, alpha-beta thymocyte	3 studies	99% ± 0%	Explore
progenitor cell of mammary luminal epithelium	3 studies	100% ± 0%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	19 studies	90% ± 18%	Explore
lung	18 studies	84% ± 17%	Explore
intestine	14 studies	82% ± 24%	Explore
eye	10 studies	65% ± 20%	Explore
brain	9 studies	40% ± 23%	Explore
kidney	8 studies	80% ± 22%	Explore
liver	7 studies	62% ± 25%	Explore
bone marrow	6 studies	80% ± 29%	Explore
pancreas	5 studies	88% ± 16%	Explore
placenta	5 studies	75% ± 31%	Explore
uterus	5 studies	93% ± 11%	Explore
lymph node	4 studies	99% ± 1%	Explore
heart	4 studies	42% ± 20%	Explore
esophagus	4 studies	74% ± 22%	Explore
prostate	4 studies	90% ± 18%	Explore
breast	4 studies	97% ± 3%	Explore
skin	3 studies	79% ± 25%	Explore
stomach	3 studies	63% ± 22%	Explore
thymus	3 studies	77% ± 32%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	26758.21	1445 / 1445	100%	428.92	183 / 183
ovary	100%	67772.18	180 / 180	100%	981.82	430 / 430
prostate	100%	30516.33	245 / 245	100%	506.35	501 / 502
breast	100%	37747.53	459 / 459	100%	391.10	1114 / 1118
intestine	100%	28019.49	966 / 966	100%	520.73	525 / 527
thymus	100%	24604.26	653 / 653	100%	422.76	602 / 605
pancreas	100%	28873.98	328 / 328	99%	335.26	177 / 178
uterus	100%	39782.27	170 / 170	99%	342.92	456 / 459
stomach	100%	22148.03	359 / 359	99%	498.22	284 / 286
bladder	100%	30731.76	21 / 21	99%	431.03	500 / 504
lung	99%	22431.07	575 / 578	100%	352.76	1151 / 1155
kidney	100%	22012.31	89 / 89	98%	293.95	879 / 901
brain	99%	12005.42	2606 / 2642	98%	368.92	691 / 705
adrenal gland	100%	19363.26	258 / 258	90%	211.06	207 / 230
skin	100%	38897.59	1809 / 1809	90%	259.92	424 / 472
liver	95%	8441.63	215 / 226	85%	161.37	346 / 406
lymph node	0%	0	0 / 0	100%	798.27	29 / 29
spleen	100%	30431.81	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	302.58	45 / 45
ureter	0%	0	0 / 0	100%	174.43	1 / 1
blood vessel	100%	26563.38	1334 / 1335	0%	0	0 / 0
adipose	100%	31368.97	1202 / 1204	0%	0	0 / 0
muscle	99%	17256.34	794 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	95%	482.59	76 / 80
heart	95%	13735.82	817 / 861	0%	0	0 / 0
peripheral blood	57%	18127.30	527 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006412	Biological process	translation
GO_0006413	Biological process	translational initiation
GO_0042274	Biological process	ribosomal small subunit biogenesis
GO_0043066	Biological process	negative regulation of apoptotic process
GO_0030154	Biological process	cell differentiation
GO_0002181	Biological process	cytoplasmic translation
GO_0005730	Cellular component	nucleolus
GO_0022626	Cellular component	cytosolic ribosome
GO_0022627	Cellular component	cytosolic small ribosomal subunit
GO_0032040	Cellular component	small-subunit processome
GO_0070062	Cellular component	extracellular exosome
GO_0005654	Cellular component	nucleoplasm
GO_0005925	Cellular component	focal adhesion
GO_0005783	Cellular component	endoplasmic reticulum
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0005737	Cellular component	cytoplasm
GO_1990904	Cellular component	ribonucleoprotein complex
GO_0005634	Cellular component	nucleus
GO_0048027	Molecular function	mRNA 5'-UTR binding
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	RPS3A
Protein name	Small ribosomal subunit protein eS1 Ribosomal protein S3A Small ribosomal subunit protein eS1 (40S ribosomal protein S3a) (v-fos transformation effector protein) (Fte-1)
Synonyms	hCG_2026261 FTE1 MFTL
Description	FUNCTION: Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . May play a role during erythropoiesis through regulation of transcription factor DDIT3 (By similarity). . FUNCTION: May play a role during erythropoiesis through regulation of transcription factor DDIT3. . FUNCTION: May play a role during erythropoiesis through regulation of transcription factor DDIT3. . FUNCTION: May play a role during erythropoiesis through regulation of transcription factor DDIT3. . FUNCTION: May play a role during erythropoiesis through regulation of transcription factor DDIT3. . FUNCTION: May play a role during erythropoiesis through regulation of transcription factor DDIT3. .
Accessions	D6RED7 P61247 ENST00000509736.5 ENST00000507327.5 H0Y9Y4 ENST00000512797.5 D6RB09 D6RAT0 ENST00000514682.5 ENST00000506126.5 B7Z3M5 ENST00000515818.5 ENST00000709893.1 ENST00000515792.5 Q6NXR8 D6RG13 D6RAS7 ENST00000505243.5 E9PFI5 ENST00000503002.5 D6RI02 ENST00000510993.1 H0Y8L7 ENST00000512690.5 D6R9B6 ENST00000274065.9 ENST00000508783.5 D6RGE0 A8K4W0

RPS3A report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review