Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 19 studies | 83% ± 19% | |
peripheral blood | 19 studies | 92% ± 13% | |
brain | 14 studies | 41% ± 21% | |
intestine | 13 studies | 88% ± 17% | |
eye | 10 studies | 60% ± 22% | |
kidney | 8 studies | 81% ± 19% | |
liver | 7 studies | 67% ± 24% | |
bone marrow | 6 studies | 91% ± 10% | |
pancreas | 5 studies | 84% ± 19% | |
uterus | 5 studies | 91% ± 16% | |
lymph node | 4 studies | 99% ± 1% | |
placenta | 4 studies | 88% ± 20% | |
heart | 4 studies | 43% ± 19% | |
adipose | 4 studies | 52% ± 30% | |
esophagus | 4 studies | 76% ± 23% | |
prostate | 4 studies | 86% ± 24% | |
breast | 4 studies | 97% ± 3% | |
skin | 3 studies | 84% ± 18% | |
stomach | 3 studies | 70% ± 19% | |
thymus | 3 studies | 79% ± 30% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 56142.45 | 1445 / 1445 | 100% | 708.38 | 183 / 183 |
ovary | 100% | 164145.72 | 180 / 180 | 100% | 1830.22 | 430 / 430 |
pancreas | 100% | 51541.53 | 328 / 328 | 100% | 1000.61 | 178 / 178 |
prostate | 100% | 61132.35 | 245 / 245 | 100% | 1856.13 | 502 / 502 |
stomach | 100% | 39530.34 | 359 / 359 | 100% | 1144.58 | 286 / 286 |
uterus | 100% | 79612.22 | 170 / 170 | 100% | 1427.65 | 459 / 459 |
skin | 100% | 80088.63 | 1807 / 1809 | 100% | 1210.77 | 472 / 472 |
breast | 100% | 73911.04 | 459 / 459 | 100% | 1183.31 | 1116 / 1118 |
intestine | 100% | 53305.03 | 966 / 966 | 100% | 1422.45 | 526 / 527 |
thymus | 100% | 41765.93 | 652 / 653 | 100% | 1326.22 | 604 / 605 |
bladder | 100% | 60180.86 | 21 / 21 | 100% | 1391.27 | 502 / 504 |
lung | 100% | 42111.45 | 576 / 578 | 100% | 1090.91 | 1154 / 1155 |
kidney | 100% | 37954.34 | 89 / 89 | 99% | 904.92 | 888 / 901 |
brain | 98% | 20657.80 | 2601 / 2642 | 100% | 795.71 | 702 / 705 |
adrenal gland | 100% | 61839.78 | 258 / 258 | 97% | 652.84 | 223 / 230 |
liver | 99% | 20773.83 | 223 / 226 | 98% | 702.67 | 398 / 406 |
adipose | 100% | 64476.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 2496.61 | 29 / 29 |
spleen | 100% | 57471.62 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 1187.40 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1032.17 | 1 / 1 |
blood vessel | 100% | 47881.53 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 35154.61 | 794 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 1992.87 | 79 / 80 |
heart | 96% | 24390.47 | 830 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 40550.08 | 812 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006412 | Biological process | translation |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0000462 | Biological process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0002181 | Biological process | cytoplasmic translation |
GO_0005730 | Cellular component | nucleolus |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0016020 | Cellular component | membrane |
GO_0032040 | Cellular component | small-subunit processome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005925 | Cellular component | focal adhesion |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005634 | Cellular component | nucleus |
GO_0003735 | Molecular function | structural constituent of ribosome |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RPS8 |
Protein name | Small ribosomal subunit protein eS8 (40S ribosomal protein S8) 40S ribosomal protein S8 |
Synonyms | hCG_2031852 OK/SW-cl.83 |
Description | FUNCTION: Component of the small ribosomal subunit . The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | ENST00000372209.3 P62241 Q5JR94 Q5JR95 ENST00000396651.8 |