Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 19 studies | 81% ± 20% | |
peripheral blood | 19 studies | 91% ± 15% | |
intestine | 14 studies | 84% ± 19% | |
brain | 12 studies | 42% ± 20% | |
eye | 10 studies | 65% ± 20% | |
kidney | 8 studies | 82% ± 20% | |
liver | 7 studies | 69% ± 24% | |
bone marrow | 6 studies | 91% ± 10% | |
uterus | 6 studies | 82% ± 22% | |
pancreas | 5 studies | 86% ± 19% | |
lymph node | 5 studies | 83% ± 31% | |
placenta | 4 studies | 86% ± 23% | |
heart | 4 studies | 44% ± 21% | |
adipose | 4 studies | 48% ± 29% | |
esophagus | 4 studies | 72% ± 24% | |
prostate | 4 studies | 89% ± 19% | |
breast | 4 studies | 97% ± 3% | |
ovary | 3 studies | 75% ± 29% | |
skin | 3 studies | 78% ± 28% | |
stomach | 3 studies | 65% ± 21% | |
thymus | 3 studies | 82% ± 25% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 51326.49 | 180 / 180 | 100% | 144.71 | 430 / 430 |
stomach | 100% | 16826.23 | 359 / 359 | 100% | 124.67 | 286 / 286 |
prostate | 100% | 21420.46 | 245 / 245 | 100% | 161.15 | 501 / 502 |
pancreas | 100% | 16305.86 | 327 / 328 | 100% | 96.92 | 178 / 178 |
thymus | 100% | 18894.82 | 653 / 653 | 100% | 134.55 | 603 / 605 |
intestine | 100% | 23459.78 | 966 / 966 | 100% | 138.57 | 525 / 527 |
uterus | 100% | 29398.31 | 170 / 170 | 100% | 88.22 | 457 / 459 |
brain | 100% | 12784.33 | 2630 / 2642 | 100% | 138.26 | 705 / 705 |
esophagus | 100% | 21395.85 | 1445 / 1445 | 99% | 87.76 | 182 / 183 |
skin | 100% | 31443.91 | 1809 / 1809 | 99% | 114.34 | 469 / 472 |
breast | 100% | 28775.36 | 459 / 459 | 99% | 115.19 | 1110 / 1118 |
lung | 100% | 18316.53 | 577 / 578 | 99% | 75.49 | 1148 / 1155 |
bladder | 100% | 24098.67 | 21 / 21 | 99% | 105.79 | 500 / 504 |
kidney | 100% | 17800.12 | 89 / 89 | 99% | 106.08 | 891 / 901 |
adrenal gland | 100% | 15940.35 | 258 / 258 | 99% | 121.49 | 227 / 230 |
liver | 92% | 7162.37 | 209 / 226 | 95% | 67.24 | 387 / 406 |
adipose | 100% | 26563.91 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 26694.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 268.21 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 214.44 | 29 / 29 |
muscle | 100% | 24434.63 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 23041.39 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 90.92 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 44.77 | 1 / 1 |
heart | 95% | 12742.96 | 821 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 86% | 18284.95 | 797 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034063 | Biological process | stress granule assembly |
GO_0006412 | Biological process | translation |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_1990145 | Biological process | maintenance of translational fidelity |
GO_0002181 | Biological process | cytoplasmic translation |
GO_0005730 | Cellular component | nucleolus |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0005840 | Cellular component | ribosome |
GO_0016020 | Cellular component | membrane |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0005737 | Cellular component | cytoplasm |
GO_0005791 | Cellular component | rough endoplasmic reticulum |
GO_0003735 | Molecular function | structural constituent of ribosome |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RPS23 |
Protein name | Ribosomal protein S23 Small ribosomal subunit protein uS12 (40S ribosomal protein S23) |
Synonyms | hCG_38189 |
Description | FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules . The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain . The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel . Plays an important role in translational accuracy . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | ENST00000510210.5 D6RDJ2 ENST00000651545.1 ENST00000507980.1 D6RD47 A8K517 ENST00000512493.5 ENST00000510019.5 P62266 D6R9I7 D6RIX0 ENST00000511844.1 ENST00000296674.13 |